Assessing the protistan functional diversity in soil and roots of common crops in Sapa district, Lao Cai province, Vietnam
The traditional method of relying on described phenotypic characteristics of protistan taxa is commonly relied upon for taxonomy-based functional classifications. Here, this method provided a broad overview of the functional diversity of protists, specifically suggesting that consumers dominated the...
| Autores principales: | , , , |
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| Formato: | Informe técnico |
| Lenguaje: | Inglés |
| Publicado: |
2025
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/168970 |
| _version_ | 1855534931332038656 |
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| author | Nguyen, Hung Herrmann, Laetitia Dung, Le Viet Lesueur, Didier |
| author_browse | Dung, Le Viet Herrmann, Laetitia Lesueur, Didier Nguyen, Hung |
| author_facet | Nguyen, Hung Herrmann, Laetitia Dung, Le Viet Lesueur, Didier |
| author_sort | Nguyen, Hung |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | The traditional method of relying on described phenotypic characteristics of protistan taxa is commonly relied upon for taxonomy-based functional classifications. Here, this method provided a broad overview of the functional diversity of protists, specifically suggesting that consumers dominated the protistan communities. However, further analysis of just two taxa (i.e., the only two that could be examined) found the commonly utilized classifications to not be encompassing enough (Adl et al. 2019). Both taxa had additional potential trophic functions proposed, with Ciliophora potentially (also) parasitic, and significant evidence that Euglyphida is phototrophic. The latter classification significantly alters the initial functional diversity assessment, where it originally seemed as though there were no significant phototrophic taxa, despite most studies having identified at least a few representatives of each of the three trophic functional groups in their experiments. Unfortunately, limitations in available genomic data do not allow more robust genotypic analyses of other protistan taxa.
Nonetheless, a few specific functions of interest could be identified. First, it seems that phototrophy is associated with both a low pH and high CEC. Second, consumers are significantly correlated with crop type, particularly with a higher abundance in association with maize, suggesting there may be at least a unilateral feeding association, if not cross-feeding, despite non-significant variation in OM or OC. Lastly, Muong Hoa soil does harbor a relatively higher abundance of protists, and there is a specific association with protistan consumers, suggesting organic practices may have some influence here.
At this stage however, this is the limit to the analysis of the functional diversity of protists, especially in correlation with locations, crop types, and associated parameters given the limited amount of reference data for protistan taxonomy-based functional classifications. |
| format | Informe técnico |
| id | CGSpace168970 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2025 |
| publishDateRange | 2025 |
| publishDateSort | 2025 |
| record_format | dspace |
| spelling | CGSpace1689702025-12-08T09:54:28Z Assessing the protistan functional diversity in soil and roots of common crops in Sapa district, Lao Cai province, Vietnam Nguyen, Hung Herrmann, Laetitia Dung, Le Viet Lesueur, Didier organic agriculture soil quality-soil health protista-protists The traditional method of relying on described phenotypic characteristics of protistan taxa is commonly relied upon for taxonomy-based functional classifications. Here, this method provided a broad overview of the functional diversity of protists, specifically suggesting that consumers dominated the protistan communities. However, further analysis of just two taxa (i.e., the only two that could be examined) found the commonly utilized classifications to not be encompassing enough (Adl et al. 2019). Both taxa had additional potential trophic functions proposed, with Ciliophora potentially (also) parasitic, and significant evidence that Euglyphida is phototrophic. The latter classification significantly alters the initial functional diversity assessment, where it originally seemed as though there were no significant phototrophic taxa, despite most studies having identified at least a few representatives of each of the three trophic functional groups in their experiments. Unfortunately, limitations in available genomic data do not allow more robust genotypic analyses of other protistan taxa. Nonetheless, a few specific functions of interest could be identified. First, it seems that phototrophy is associated with both a low pH and high CEC. Second, consumers are significantly correlated with crop type, particularly with a higher abundance in association with maize, suggesting there may be at least a unilateral feeding association, if not cross-feeding, despite non-significant variation in OM or OC. Lastly, Muong Hoa soil does harbor a relatively higher abundance of protists, and there is a specific association with protistan consumers, suggesting organic practices may have some influence here. At this stage however, this is the limit to the analysis of the functional diversity of protists, especially in correlation with locations, crop types, and associated parameters given the limited amount of reference data for protistan taxonomy-based functional classifications. 2025-01-13 2025-01-14T14:56:00Z 2025-01-14T14:56:00Z Report https://hdl.handle.net/10568/168970 en Limited Access Nguyen, H.; Herrmann, L.; Dung, L.V.; Lesueur, D. (2024) Assessing the protistan functional diversity in soil and roots of common crops in Sapa district, Lao Cai province, Vietnam. 31 p. |
| spellingShingle | organic agriculture soil quality-soil health protista-protists Nguyen, Hung Herrmann, Laetitia Dung, Le Viet Lesueur, Didier Assessing the protistan functional diversity in soil and roots of common crops in Sapa district, Lao Cai province, Vietnam |
| title | Assessing the protistan functional diversity in soil and roots of common crops in Sapa district, Lao Cai province, Vietnam |
| title_full | Assessing the protistan functional diversity in soil and roots of common crops in Sapa district, Lao Cai province, Vietnam |
| title_fullStr | Assessing the protistan functional diversity in soil and roots of common crops in Sapa district, Lao Cai province, Vietnam |
| title_full_unstemmed | Assessing the protistan functional diversity in soil and roots of common crops in Sapa district, Lao Cai province, Vietnam |
| title_short | Assessing the protistan functional diversity in soil and roots of common crops in Sapa district, Lao Cai province, Vietnam |
| title_sort | assessing the protistan functional diversity in soil and roots of common crops in sapa district lao cai province vietnam |
| topic | organic agriculture soil quality-soil health protista-protists |
| url | https://hdl.handle.net/10568/168970 |
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