The Rice Annotation Project Database (RAP-DB): 2008 update
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice...
| Main Authors: | , , , , , , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Oxford University Press
2007
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/166387 |
| _version_ | 1855532887082795008 |
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| author | Tanaka, T. Antonio, B.A. Kikuchi, S. Matsumoto, T. Nagamura, Y. Numa, H. Sakai, H. Wu, J.Z. Itoh, T. Sasaki, T. Bruskiewich, R.M. |
| author_browse | Antonio, B.A. Bruskiewich, R.M. Itoh, T. Kikuchi, S. Matsumoto, T. Nagamura, Y. Numa, H. Sakai, H. Sasaki, T. Tanaka, T. Wu, J.Z. |
| author_facet | Tanaka, T. Antonio, B.A. Kikuchi, S. Matsumoto, T. Nagamura, Y. Numa, H. Sakai, H. Wu, J.Z. Itoh, T. Sasaki, T. Bruskiewich, R.M. |
| author_sort | Tanaka, T. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice biology. Since the last publication of the RAP-DB, the IRGSP genome has been revised and reassembled. In addition, a large number of rice-expressed sequence tags have been released, and functional genomics resources have been produced worldwide. Thus, we have thoroughly updated our genome annotation by manual curation of all the functional descriptions of rice genes. The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc. Other annotation data such as Gnomon can be displayed along with those of RAP for comparison. We have also developed a new keyword search system to allow the user to access useful information. |
| format | Journal Article |
| id | CGSpace166387 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2007 |
| publishDateRange | 2007 |
| publishDateSort | 2007 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace1663872025-05-14T10:39:51Z The Rice Annotation Project Database (RAP-DB): 2008 update Tanaka, T. Antonio, B.A. Kikuchi, S. Matsumoto, T. Nagamura, Y. Numa, H. Sakai, H. Wu, J.Z. Itoh, T. Sasaki, T. Bruskiewich, R.M. bioinformatics complementary dna databases genomes genes rna nucleotide sequences The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice biology. Since the last publication of the RAP-DB, the IRGSP genome has been revised and reassembled. In addition, a large number of rice-expressed sequence tags have been released, and functional genomics resources have been produced worldwide. Thus, we have thoroughly updated our genome annotation by manual curation of all the functional descriptions of rice genes. The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc. Other annotation data such as Gnomon can be displayed along with those of RAP for comparison. We have also developed a new keyword search system to allow the user to access useful information. 2007-12-23 2024-12-19T12:56:13Z 2024-12-19T12:56:13Z Journal Article https://hdl.handle.net/10568/166387 en Open Access Oxford University Press Tanaka, T.; Antonio, B. A.; Kikuchi, S.; Matsumoto, T.; Nagamura, Y.; Numa, H.; Sakai, H.; Wu, J. Z.; Itoh, T.; Sasaki, T. and Bruskiewich, R. M.. 2007. The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Research, Volume 36 no. Database p. D1028-D1033 |
| spellingShingle | bioinformatics complementary dna databases genomes genes rna nucleotide sequences Tanaka, T. Antonio, B.A. Kikuchi, S. Matsumoto, T. Nagamura, Y. Numa, H. Sakai, H. Wu, J.Z. Itoh, T. Sasaki, T. Bruskiewich, R.M. The Rice Annotation Project Database (RAP-DB): 2008 update |
| title | The Rice Annotation Project Database (RAP-DB): 2008 update |
| title_full | The Rice Annotation Project Database (RAP-DB): 2008 update |
| title_fullStr | The Rice Annotation Project Database (RAP-DB): 2008 update |
| title_full_unstemmed | The Rice Annotation Project Database (RAP-DB): 2008 update |
| title_short | The Rice Annotation Project Database (RAP-DB): 2008 update |
| title_sort | rice annotation project database rap db 2008 update |
| topic | bioinformatics complementary dna databases genomes genes rna nucleotide sequences |
| url | https://hdl.handle.net/10568/166387 |
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