RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome
RiceGeneThresher is a public online resource for mining genes underlying genome regions of interest or quantitative trait loci (QTL) in rice genome. It is a compendium of rice genomic resources consisting of genetic markers, genome annotation, expressed sequence tags (ESTs), protein domains, gene on...
| Autores principales: | , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Oxford University Press
2009
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| Acceso en línea: | https://hdl.handle.net/10568/166232 |
| _version_ | 1855514938187972608 |
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| author | Thongjuea, S. Ruanjaichon, V. Bruskiewich, R. Vanavichit, A. |
| author_browse | Bruskiewich, R. Ruanjaichon, V. Thongjuea, S. Vanavichit, A. |
| author_facet | Thongjuea, S. Ruanjaichon, V. Bruskiewich, R. Vanavichit, A. |
| author_sort | Thongjuea, S. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | RiceGeneThresher is a public online resource for mining genes underlying genome regions of interest or quantitative trait loci (QTL) in rice genome. It is a compendium of rice genomic resources consisting of genetic markers, genome annotation, expressed sequence tags (ESTs), protein domains, gene ontology, plant stress-responsive genes, metabolic pathways and prediction of protein–protein interactions. RiceGeneThresher system integrates these diverse data sources and provides powerful web-based applications, and flexible tools for delivering customized set of biological data on rice. Its system supports whole-genome gene mining for QTL by querying using DNA marker intervals or genomic loci. RiceGeneThresher provides biologically supported evidences that are essential for targeting groups or networks of genes involved in controlling traits underlying QTL. Users can use it to discover and to assign the most promising candidate genes in preparation for the further gene function validation analysis. |
| format | Journal Article |
| id | CGSpace166232 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2009 |
| publishDateRange | 2009 |
| publishDateSort | 2009 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace1662322024-12-19T14:11:51Z RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome Thongjuea, S. Ruanjaichon, V. Bruskiewich, R. Vanavichit, A. databases genes genomes quantitative trait loci RiceGeneThresher is a public online resource for mining genes underlying genome regions of interest or quantitative trait loci (QTL) in rice genome. It is a compendium of rice genomic resources consisting of genetic markers, genome annotation, expressed sequence tags (ESTs), protein domains, gene ontology, plant stress-responsive genes, metabolic pathways and prediction of protein–protein interactions. RiceGeneThresher system integrates these diverse data sources and provides powerful web-based applications, and flexible tools for delivering customized set of biological data on rice. Its system supports whole-genome gene mining for QTL by querying using DNA marker intervals or genomic loci. RiceGeneThresher provides biologically supported evidences that are essential for targeting groups or networks of genes involved in controlling traits underlying QTL. Users can use it to discover and to assign the most promising candidate genes in preparation for the further gene function validation analysis. 2009-01-01 2024-12-19T12:56:01Z 2024-12-19T12:56:01Z Journal Article https://hdl.handle.net/10568/166232 en Open Access Oxford University Press Thongjuea, S.; Ruanjaichon, V.; Bruskiewich, R. and Vanavichit, A. 2009. RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome. Nucleic Acids Research, Volume 37 no. Database p. D996-D1000 |
| spellingShingle | databases genes genomes quantitative trait loci Thongjuea, S. Ruanjaichon, V. Bruskiewich, R. Vanavichit, A. RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome |
| title | RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome |
| title_full | RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome |
| title_fullStr | RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome |
| title_full_unstemmed | RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome |
| title_short | RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome |
| title_sort | ricegenethresher a web based application for mining genes underlying qtl in rice genome |
| topic | databases genes genomes quantitative trait loci |
| url | https://hdl.handle.net/10568/166232 |
| work_keys_str_mv | AT thongjueas ricegenethresherawebbasedapplicationformininggenesunderlyingqtlinricegenome AT ruanjaichonv ricegenethresherawebbasedapplicationformininggenesunderlyingqtlinricegenome AT bruskiewichr ricegenethresherawebbasedapplicationformininggenesunderlyingqtlinricegenome AT vanavichita ricegenethresherawebbasedapplicationformininggenesunderlyingqtlinricegenome |