Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
Rice, the primary source of dietary calories for half of humanity, is the first crop plant for which a high-quality reference genome sequence from a single variety was produced. We used resequencing microarrays to interrogate 100 Mb of the unique fraction of the reference genome for 20 diverse varie...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
National Academy of Sciences
2009
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/166151 |
| _version_ | 1855516538935705600 |
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| author | McNally, Kenneth L. Childs, Kevin L. Bohnert, Regina Davidson, Rebecca M. Zhao, Keyan Ulat, Victor J. Zeller, Georg Clark, Richard M. Hoen, Douglas R. Bureau, Thomas E. Stokowski, Renee Ballinger, Dennis G. Frazer, Kelly A. Cox, David R. Padhukasahasram, Badri Bustamante, Carlos D. Weigel, Detlef Mackill, David J. Bruskiewich, Richard M. Rätsch, Gunnar Buell, C. Robin Leung, Hei Leach, Jan E. |
| author_browse | Ballinger, Dennis G. Bohnert, Regina Bruskiewich, Richard M. Buell, C. Robin Bureau, Thomas E. Bustamante, Carlos D. Childs, Kevin L. Clark, Richard M. Cox, David R. Davidson, Rebecca M. Frazer, Kelly A. Hoen, Douglas R. Leach, Jan E. Leung, Hei Mackill, David J. McNally, Kenneth L. Padhukasahasram, Badri Rätsch, Gunnar Stokowski, Renee Ulat, Victor J. Weigel, Detlef Zeller, Georg Zhao, Keyan |
| author_facet | McNally, Kenneth L. Childs, Kevin L. Bohnert, Regina Davidson, Rebecca M. Zhao, Keyan Ulat, Victor J. Zeller, Georg Clark, Richard M. Hoen, Douglas R. Bureau, Thomas E. Stokowski, Renee Ballinger, Dennis G. Frazer, Kelly A. Cox, David R. Padhukasahasram, Badri Bustamante, Carlos D. Weigel, Detlef Mackill, David J. Bruskiewich, Richard M. Rätsch, Gunnar Buell, C. Robin Leung, Hei Leach, Jan E. |
| author_sort | McNally, Kenneth L. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Rice, the primary source of dietary calories for half of humanity, is the first crop plant for which a high-quality reference genome sequence from a single variety was produced. We used resequencing microarrays to interrogate 100 Mb of the unique fraction of the reference genome for 20 diverse varieties and landraces that capture the impressive genotypic and phenotypic diversity of domesticated rice. Here, we report the distribution of 160,000 nonredundant SNPs. Introgression patterns of shared SNPs revealed the breeding history and relationships among the 20 varieties; some introgressed regions are associated with agronomic traits that mark major milestones in rice improvement. These comprehensive SNP data provide a foundation for deep exploration of rice diversity and gene–trait relationships and their use for future rice improvement. |
| format | Journal Article |
| id | CGSpace166151 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2009 |
| publishDateRange | 2009 |
| publishDateSort | 2009 |
| publisher | National Academy of Sciences |
| publisherStr | National Academy of Sciences |
| record_format | dspace |
| spelling | CGSpace1661512024-12-22T05:44:44Z Genomewide SNP variation reveals relationships among landraces and modern varieties of rice McNally, Kenneth L. Childs, Kevin L. Bohnert, Regina Davidson, Rebecca M. Zhao, Keyan Ulat, Victor J. Zeller, Georg Clark, Richard M. Hoen, Douglas R. Bureau, Thomas E. Stokowski, Renee Ballinger, Dennis G. Frazer, Kelly A. Cox, David R. Padhukasahasram, Badri Bustamante, Carlos D. Weigel, Detlef Mackill, David J. Bruskiewich, Richard M. Rätsch, Gunnar Buell, C. Robin Leung, Hei Leach, Jan E. genes genetic diversity genomes introgression landraces single nucleotide polymorphism varieties Rice, the primary source of dietary calories for half of humanity, is the first crop plant for which a high-quality reference genome sequence from a single variety was produced. We used resequencing microarrays to interrogate 100 Mb of the unique fraction of the reference genome for 20 diverse varieties and landraces that capture the impressive genotypic and phenotypic diversity of domesticated rice. Here, we report the distribution of 160,000 nonredundant SNPs. Introgression patterns of shared SNPs revealed the breeding history and relationships among the 20 varieties; some introgressed regions are associated with agronomic traits that mark major milestones in rice improvement. These comprehensive SNP data provide a foundation for deep exploration of rice diversity and gene–trait relationships and their use for future rice improvement. 2009-07-28 2024-12-19T12:55:55Z 2024-12-19T12:55:55Z Journal Article https://hdl.handle.net/10568/166151 en National Academy of Sciences McNally, Kenneth L.; Childs, Kevin L.; Bohnert, Regina; Davidson, Rebecca M.; Zhao, Keyan; Ulat, Victor J.; Zeller, Georg; Clark, Richard M.; Hoen, Douglas R.; Bureau, Thomas E.; Stokowski, Renee; Ballinger, Dennis G.; Frazer, Kelly A.; Cox, David R.; Padhukasahasram, Badri; Bustamante, Carlos D.; Weigel, Detlef; Mackill, David J.; Bruskiewich, Richard M.; Rätsch, Gunnar; Buell, C. Robin; Leung, Hei and Leach, Jan E. 2009. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc. Natl. Acad. Sci. U.S.A., Volume 106 no. 30 p. 12273-12278 |
| spellingShingle | genes genetic diversity genomes introgression landraces single nucleotide polymorphism varieties McNally, Kenneth L. Childs, Kevin L. Bohnert, Regina Davidson, Rebecca M. Zhao, Keyan Ulat, Victor J. Zeller, Georg Clark, Richard M. Hoen, Douglas R. Bureau, Thomas E. Stokowski, Renee Ballinger, Dennis G. Frazer, Kelly A. Cox, David R. Padhukasahasram, Badri Bustamante, Carlos D. Weigel, Detlef Mackill, David J. Bruskiewich, Richard M. Rätsch, Gunnar Buell, C. Robin Leung, Hei Leach, Jan E. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice |
| title | Genomewide SNP variation reveals relationships among landraces and modern varieties of rice |
| title_full | Genomewide SNP variation reveals relationships among landraces and modern varieties of rice |
| title_fullStr | Genomewide SNP variation reveals relationships among landraces and modern varieties of rice |
| title_full_unstemmed | Genomewide SNP variation reveals relationships among landraces and modern varieties of rice |
| title_short | Genomewide SNP variation reveals relationships among landraces and modern varieties of rice |
| title_sort | genomewide snp variation reveals relationships among landraces and modern varieties of rice |
| topic | genes genetic diversity genomes introgression landraces single nucleotide polymorphism varieties |
| url | https://hdl.handle.net/10568/166151 |
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