Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola.
A computational genomics pipeline was used to compare sequenced genomes of Xanthomonas spp. and to rapidly identify unique regions for development of highly specific diagnostic markers. A suite of diagnostic primers was selected to monitor diverse loci and to distinguish the rice bacterial blight an...
| Autores principales: | , , , , , , , , |
|---|---|
| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Scientific Societies
2010
|
| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/166072 |
| _version_ | 1855521276804726784 |
|---|---|
| author | Lang, Jillian M. Hamilton, John P. Diaz, Maria Genaleen Q. Van Sluys, Marie Anne Burgos, Ma. Ruby G. Vera Cruz, Casiana M. Buell, C. Robin Tisserat, Ned A. Leach, Jan E. |
| author_browse | Buell, C. Robin Burgos, Ma. Ruby G. Diaz, Maria Genaleen Q. Hamilton, John P. Lang, Jillian M. Leach, Jan E. Tisserat, Ned A. Van Sluys, Marie Anne Vera Cruz, Casiana M. |
| author_facet | Lang, Jillian M. Hamilton, John P. Diaz, Maria Genaleen Q. Van Sluys, Marie Anne Burgos, Ma. Ruby G. Vera Cruz, Casiana M. Buell, C. Robin Tisserat, Ned A. Leach, Jan E. |
| author_sort | Lang, Jillian M. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | A computational genomics pipeline was used to compare sequenced genomes of Xanthomonas spp. and to rapidly identify unique regions for development of highly specific diagnostic markers. A suite of diagnostic primers was selected to monitor diverse loci and to distinguish the rice bacterial blight and bacterial leaf streak pathogens, Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola, respectively. A subset of these primers was combined into a multiplex polymerase chain reaction set that accurately distinguished the two rice pathogens in a survey of a geographically diverse collection of X. oryzae pv. oryzae, X. oryzae pv. oryzicola, other xanthomonads, and several genera of plant-pathogenic and plant- or seed-associated bacteria. This computational approach for identification of unique loci through whole-genome comparisons is a powerful tool that can be applied to other plant pathogens to expedite development of diagnostic primers. |
| format | Journal Article |
| id | CGSpace166072 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2010 |
| publishDateRange | 2010 |
| publishDateSort | 2010 |
| publisher | Scientific Societies |
| publisherStr | Scientific Societies |
| record_format | dspace |
| spelling | CGSpace1660722024-12-22T05:44:50Z Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola. Lang, Jillian M. Hamilton, John P. Diaz, Maria Genaleen Q. Van Sluys, Marie Anne Burgos, Ma. Ruby G. Vera Cruz, Casiana M. Buell, C. Robin Tisserat, Ned A. Leach, Jan E. diagnostic techniques genetic markers genome analysis genomes genomics nucleotide sequences plant pathogenic bacteria polymerase chain reaction xanthomonas oryzae pv oryzae oryzicola A computational genomics pipeline was used to compare sequenced genomes of Xanthomonas spp. and to rapidly identify unique regions for development of highly specific diagnostic markers. A suite of diagnostic primers was selected to monitor diverse loci and to distinguish the rice bacterial blight and bacterial leaf streak pathogens, Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola, respectively. A subset of these primers was combined into a multiplex polymerase chain reaction set that accurately distinguished the two rice pathogens in a survey of a geographically diverse collection of X. oryzae pv. oryzae, X. oryzae pv. oryzicola, other xanthomonads, and several genera of plant-pathogenic and plant- or seed-associated bacteria. This computational approach for identification of unique loci through whole-genome comparisons is a powerful tool that can be applied to other plant pathogens to expedite development of diagnostic primers. 2010-03 2024-12-19T12:55:48Z 2024-12-19T12:55:48Z Journal Article https://hdl.handle.net/10568/166072 en Scientific Societies Lang, Jillian M.; Hamilton, John P.; Diaz, Maria Genaleen Q.; Van Sluys, Marie Anne; Burgos, Ma. Ruby G.; Vera Cruz, Casiana M.; Buell, C. Robin; Tisserat, Ned A. and Leach, Jan E. 2010. Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola. Plant Disease, Volume 94 no. 3 p. 311-319 |
| spellingShingle | diagnostic techniques genetic markers genome analysis genomes genomics nucleotide sequences plant pathogenic bacteria polymerase chain reaction xanthomonas oryzae pv oryzae oryzicola Lang, Jillian M. Hamilton, John P. Diaz, Maria Genaleen Q. Van Sluys, Marie Anne Burgos, Ma. Ruby G. Vera Cruz, Casiana M. Buell, C. Robin Tisserat, Ned A. Leach, Jan E. Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola. |
| title | Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola. |
| title_full | Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola. |
| title_fullStr | Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola. |
| title_full_unstemmed | Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola. |
| title_short | Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola. |
| title_sort | genomics based diagnostic marker development for xanthomonas oryzae pv oryzae and x oryzae pv oryzicola |
| topic | diagnostic techniques genetic markers genome analysis genomes genomics nucleotide sequences plant pathogenic bacteria polymerase chain reaction xanthomonas oryzae pv oryzae oryzicola |
| url | https://hdl.handle.net/10568/166072 |
| work_keys_str_mv | AT langjillianm genomicsbaseddiagnosticmarkerdevelopmentforxanthomonasoryzaepvoryzaeandxoryzaepvoryzicola AT hamiltonjohnp genomicsbaseddiagnosticmarkerdevelopmentforxanthomonasoryzaepvoryzaeandxoryzaepvoryzicola AT diazmariagenaleenq genomicsbaseddiagnosticmarkerdevelopmentforxanthomonasoryzaepvoryzaeandxoryzaepvoryzicola AT vansluysmarieanne genomicsbaseddiagnosticmarkerdevelopmentforxanthomonasoryzaepvoryzaeandxoryzaepvoryzicola AT burgosmarubyg genomicsbaseddiagnosticmarkerdevelopmentforxanthomonasoryzaepvoryzaeandxoryzaepvoryzicola AT veracruzcasianam genomicsbaseddiagnosticmarkerdevelopmentforxanthomonasoryzaepvoryzaeandxoryzaepvoryzicola AT buellcrobin genomicsbaseddiagnosticmarkerdevelopmentforxanthomonasoryzaepvoryzaeandxoryzaepvoryzicola AT tisseratneda genomicsbaseddiagnosticmarkerdevelopmentforxanthomonasoryzaepvoryzaeandxoryzaepvoryzicola AT leachjane genomicsbaseddiagnosticmarkerdevelopmentforxanthomonasoryzaepvoryzaeandxoryzaepvoryzicola |