Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.)
We present an overview of a research platform that provides essential germplasm, genotypic and phenotypic data and analytical tools for dissecting phenotype–genotype associations in rice. These resources include a diversity panel of 400 Oryza sativa and 100 Oryza rufipogon accessions that have been...
| Main Authors: | , , , , , , , , , , , , , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Springer
2010
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/165995 |
| _version_ | 1855537364034650112 |
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| author | Tung, Chih-Wei Zhao, Keyan Wright, Mark H. Ali, M. Liakat Jung, Janelle Kimball, Jennifer Tyagi, Wricha Thomson, Michael J. McNally, Kenneth Leung, Hei Kim, Hyunjung Ahn, Sang-Nag Reynolds, Andy Scheffler, Brian Eizenga, Georgia McClung, Anna Bustamante, Carlos McCouch, Susan R. |
| author_browse | Ahn, Sang-Nag Ali, M. Liakat Bustamante, Carlos Eizenga, Georgia Jung, Janelle Kim, Hyunjung Kimball, Jennifer Leung, Hei McClung, Anna McCouch, Susan R. McNally, Kenneth Reynolds, Andy Scheffler, Brian Thomson, Michael J. Tung, Chih-Wei Tyagi, Wricha Wright, Mark H. Zhao, Keyan |
| author_facet | Tung, Chih-Wei Zhao, Keyan Wright, Mark H. Ali, M. Liakat Jung, Janelle Kimball, Jennifer Tyagi, Wricha Thomson, Michael J. McNally, Kenneth Leung, Hei Kim, Hyunjung Ahn, Sang-Nag Reynolds, Andy Scheffler, Brian Eizenga, Georgia McClung, Anna Bustamante, Carlos McCouch, Susan R. |
| author_sort | Tung, Chih-Wei |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | We present an overview of a research platform that provides essential germplasm, genotypic and phenotypic data and analytical tools for dissecting phenotype–genotype associations in rice. These resources include a diversity panel of 400 Oryza sativa and 100 Oryza rufipogon accessions that have been purified by single seed descent, a custom-designed Affymetrix array consisting of 44,100 SNPs, an Illumina GoldenGate assay consisting of 1,536 SNPs, and a suite of low-resolution 384-SNP assays for the Illumina BeadXpress Reader that are designed for applications in breeding, genetics and germplasm management. Our long-term goal is to empower basic research discoveries in rice by linking sequence diversity with physiological, morphological, and agronomic variation. This research platform will also help increase breeding efficiency by providing a database of diversity information that will enable researchers to identify useful DNA polymorphisms in genes and germplasm of interest and convert that information into cost-effective tools for applied plant improvement. |
| format | Journal Article |
| id | CGSpace165995 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2010 |
| publishDateRange | 2010 |
| publishDateSort | 2010 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace1659952024-12-19T14:13:25Z Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) Tung, Chih-Wei Zhao, Keyan Wright, Mark H. Ali, M. Liakat Jung, Janelle Kimball, Jennifer Tyagi, Wricha Thomson, Michael J. McNally, Kenneth Leung, Hei Kim, Hyunjung Ahn, Sang-Nag Reynolds, Andy Scheffler, Brian Eizenga, Georgia McClung, Anna Bustamante, Carlos McCouch, Susan R. databases genetic diversity genetic markers genetic polymorphism genetic variation germplasm linkage disequilibrium phenotypic variation single nulceotide polymorphism wild relatives plant genetic resources oryza rufipogon We present an overview of a research platform that provides essential germplasm, genotypic and phenotypic data and analytical tools for dissecting phenotype–genotype associations in rice. These resources include a diversity panel of 400 Oryza sativa and 100 Oryza rufipogon accessions that have been purified by single seed descent, a custom-designed Affymetrix array consisting of 44,100 SNPs, an Illumina GoldenGate assay consisting of 1,536 SNPs, and a suite of low-resolution 384-SNP assays for the Illumina BeadXpress Reader that are designed for applications in breeding, genetics and germplasm management. Our long-term goal is to empower basic research discoveries in rice by linking sequence diversity with physiological, morphological, and agronomic variation. This research platform will also help increase breeding efficiency by providing a database of diversity information that will enable researchers to identify useful DNA polymorphisms in genes and germplasm of interest and convert that information into cost-effective tools for applied plant improvement. 2010-12 2024-12-19T12:55:44Z 2024-12-19T12:55:44Z Journal Article https://hdl.handle.net/10568/165995 en Open Access Springer Tung, Chih-Wei; Zhao, Keyan; Wright, Mark H.; Ali, M. Liakat; Jung, Janelle; Kimball, Jennifer; Tyagi, Wricha; Thomson, Michael J.; McNally, Kenneth; Leung, Hei; Kim, Hyunjung; Ahn, Sang-Nag; Reynolds, Andy; Scheffler, Brian; Eizenga, Georgia; McClung, Anna; Bustamante, Carlos and McCouch, Susan R. 2010. Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.). Rice, Volume 3 no. 4 p. 205-217 |
| spellingShingle | databases genetic diversity genetic markers genetic polymorphism genetic variation germplasm linkage disequilibrium phenotypic variation single nulceotide polymorphism wild relatives plant genetic resources oryza rufipogon Tung, Chih-Wei Zhao, Keyan Wright, Mark H. Ali, M. Liakat Jung, Janelle Kimball, Jennifer Tyagi, Wricha Thomson, Michael J. McNally, Kenneth Leung, Hei Kim, Hyunjung Ahn, Sang-Nag Reynolds, Andy Scheffler, Brian Eizenga, Georgia McClung, Anna Bustamante, Carlos McCouch, Susan R. Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) |
| title | Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) |
| title_full | Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) |
| title_fullStr | Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) |
| title_full_unstemmed | Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) |
| title_short | Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) |
| title_sort | development of a research platform for dissecting phenotype genotype associations in rice oryza spp |
| topic | databases genetic diversity genetic markers genetic polymorphism genetic variation germplasm linkage disequilibrium phenotypic variation single nulceotide polymorphism wild relatives plant genetic resources oryza rufipogon |
| url | https://hdl.handle.net/10568/165995 |
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