Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses
We consider genomic imputation for low-coverage genotyping-by-sequencing data with high levels of missing data. We compensate for this loss of information by utilizing family relationships in multiparental experimental crosses. This nearly quadruples the number of usable markers when applied to a la...
| Main Authors: | , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Oxford University Press
2014
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/165527 |
| _version_ | 1855526739163217920 |
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| author | Huang, B Emma Raghavan, Chitra Mauleon, Ramil Broman, Karl W. Leung, Hei |
| author_browse | Broman, Karl W. Huang, B Emma Leung, Hei Mauleon, Ramil Raghavan, Chitra |
| author_facet | Huang, B Emma Raghavan, Chitra Mauleon, Ramil Broman, Karl W. Leung, Hei |
| author_sort | Huang, B Emma |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | We consider genomic imputation for low-coverage genotyping-by-sequencing data with high levels of missing data. We compensate for this loss of information by utilizing family relationships in multiparental experimental crosses. This nearly quadruples the number of usable markers when applied to a large rice Multiparent Advanced Generation InterCross (MAGIC) study. |
| format | Journal Article |
| id | CGSpace165527 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2014 |
| publishDateRange | 2014 |
| publishDateSort | 2014 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace1655272025-12-08T09:54:28Z Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses Huang, B Emma Raghavan, Chitra Mauleon, Ramil Broman, Karl W. Leung, Hei crosses genetic markers genomics genotypes methods parents plant breeding We consider genomic imputation for low-coverage genotyping-by-sequencing data with high levels of missing data. We compensate for this loss of information by utilizing family relationships in multiparental experimental crosses. This nearly quadruples the number of usable markers when applied to a large rice Multiparent Advanced Generation InterCross (MAGIC) study. 2014-05-01 2024-12-19T12:55:09Z 2024-12-19T12:55:09Z Journal Article https://hdl.handle.net/10568/165527 en Oxford University Press Huang, B Emma; Raghavan, Chitra; Mauleon, Ramil; Broman, Karl W and Leung, Hei. 2014. Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses. |
| spellingShingle | crosses genetic markers genomics genotypes methods parents plant breeding Huang, B Emma Raghavan, Chitra Mauleon, Ramil Broman, Karl W. Leung, Hei Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses |
| title | Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses |
| title_full | Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses |
| title_fullStr | Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses |
| title_full_unstemmed | Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses |
| title_short | Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses |
| title_sort | efficient imputation of missing markers in low coverage genotyping by sequencing data from multi parental crosses |
| topic | crosses genetic markers genomics genotypes methods parents plant breeding |
| url | https://hdl.handle.net/10568/165527 |
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