Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63
Indica rice accounts for >70% of total rice production worldwide, is genetically highly diverse, and can be divided into two major varietal groups independently bred and widely cultivated in China and Southeast Asia. Here, we generated high-quality genome sequences for two elite rice varieties, Zhen...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
National Academy of Sciences
2016
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| Acceso en línea: | https://hdl.handle.net/10568/165221 |
| _version_ | 1855540346293846016 |
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| author | Zhang, Jianwei Chen, Ling-Ling Xing, Feng Kudrna, David A. Yao, Wen Copetti, Dario Mu, Ting Li, Weiming Song, Jia-Ming Xie, Weibo Lee, Seunghee Talag, Jayson Shao, Lin An, Yue Zhang, Chun-Liu Ouyang, Yidan Sun, Shuai Jiao, Wen-Biao Lv, Fang Du, Bogu Luo, Meizhong Maldonado, Carlos Ernesto Goicoechea, Jose Luis Xiong, Lizhong Wu, Changyin Xing, Yongzhong Zhou, Dao-Xiu Yu, Sibin Zhao, Yu Wang, Gongwei Yu, Yeisoo Luo, Yijie Zhou, Zhi-Wei Hurtado, Beatriz Elena Padilla Danowitz, Ann Wing, Rod A. Zhang, Qifa |
| author_browse | An, Yue Chen, Ling-Ling Copetti, Dario Danowitz, Ann Du, Bogu Goicoechea, Jose Luis Hurtado, Beatriz Elena Padilla Jiao, Wen-Biao Kudrna, David A. Lee, Seunghee Li, Weiming Luo, Meizhong Luo, Yijie Lv, Fang Maldonado, Carlos Ernesto Mu, Ting Ouyang, Yidan Shao, Lin Song, Jia-Ming Sun, Shuai Talag, Jayson Wang, Gongwei Wing, Rod A. Wu, Changyin Xie, Weibo Xing, Feng Xing, Yongzhong Xiong, Lizhong Yao, Wen Yu, Sibin Yu, Yeisoo Zhang, Chun-Liu Zhang, Jianwei Zhang, Qifa Zhao, Yu Zhou, Dao-Xiu Zhou, Zhi-Wei |
| author_facet | Zhang, Jianwei Chen, Ling-Ling Xing, Feng Kudrna, David A. Yao, Wen Copetti, Dario Mu, Ting Li, Weiming Song, Jia-Ming Xie, Weibo Lee, Seunghee Talag, Jayson Shao, Lin An, Yue Zhang, Chun-Liu Ouyang, Yidan Sun, Shuai Jiao, Wen-Biao Lv, Fang Du, Bogu Luo, Meizhong Maldonado, Carlos Ernesto Goicoechea, Jose Luis Xiong, Lizhong Wu, Changyin Xing, Yongzhong Zhou, Dao-Xiu Yu, Sibin Zhao, Yu Wang, Gongwei Yu, Yeisoo Luo, Yijie Zhou, Zhi-Wei Hurtado, Beatriz Elena Padilla Danowitz, Ann Wing, Rod A. Zhang, Qifa |
| author_sort | Zhang, Jianwei |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Indica rice accounts for >70% of total rice production worldwide, is genetically highly diverse, and can be divided into two major varietal groups independently bred and widely cultivated in China and Southeast Asia. Here, we generated high-quality genome sequences for two elite rice varieties, Zhenshan 97 and Minghui 63, representing the two groups of indica rice and the parents of a leading rice hybrid. Comparative analyses uncovered extensive structural differences between the two genomes and complementarity in their hybrid transcriptome. These findings have general implications for understanding intraspecific variations of organisms with complex genomes. The availability of the two genomes will serve as a foundation for future genome-based explorations in rice toward both basic and applied goals. |
| format | Journal Article |
| id | CGSpace165221 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2016 |
| publishDateRange | 2016 |
| publishDateSort | 2016 |
| publisher | National Academy of Sciences |
| publisherStr | National Academy of Sciences |
| record_format | dspace |
| spelling | CGSpace1652212024-12-22T05:45:01Z Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 Zhang, Jianwei Chen, Ling-Ling Xing, Feng Kudrna, David A. Yao, Wen Copetti, Dario Mu, Ting Li, Weiming Song, Jia-Ming Xie, Weibo Lee, Seunghee Talag, Jayson Shao, Lin An, Yue Zhang, Chun-Liu Ouyang, Yidan Sun, Shuai Jiao, Wen-Biao Lv, Fang Du, Bogu Luo, Meizhong Maldonado, Carlos Ernesto Goicoechea, Jose Luis Xiong, Lizhong Wu, Changyin Xing, Yongzhong Zhou, Dao-Xiu Yu, Sibin Zhao, Yu Wang, Gongwei Yu, Yeisoo Luo, Yijie Zhou, Zhi-Wei Hurtado, Beatriz Elena Padilla Danowitz, Ann Wing, Rod A. Zhang, Qifa Indica rice accounts for >70% of total rice production worldwide, is genetically highly diverse, and can be divided into two major varietal groups independently bred and widely cultivated in China and Southeast Asia. Here, we generated high-quality genome sequences for two elite rice varieties, Zhenshan 97 and Minghui 63, representing the two groups of indica rice and the parents of a leading rice hybrid. Comparative analyses uncovered extensive structural differences between the two genomes and complementarity in their hybrid transcriptome. These findings have general implications for understanding intraspecific variations of organisms with complex genomes. The availability of the two genomes will serve as a foundation for future genome-based explorations in rice toward both basic and applied goals. 2016-08-30 2024-12-19T12:54:50Z 2024-12-19T12:54:50Z Journal Article https://hdl.handle.net/10568/165221 en National Academy of Sciences Zhang, Jianwei; Chen, Ling-Ling; Xing, Feng; Kudrna, David A.; Yao, Wen; Copetti, Dario; Mu, Ting; Li, Weiming; Song, Jia-Ming; Xie, Weibo; Lee, Seunghee; Talag, Jayson; Shao, Lin; An, Yue; Zhang, Chun-Liu; Ouyang, Yidan; Sun, Shuai; Jiao, Wen-Biao; Lv, Fang; Du, Bogu; Luo, Meizhong; Maldonado, Carlos Ernesto; Goicoechea, Jose Luis; Xiong, Lizhong; Wu, Changyin; Xing, Yongzhong; Zhou, Dao-Xiu; Yu, Sibin; Zhao, Yu; Wang, Gongwei; Yu, Yeisoo; Luo, Yijie; Zhou, Zhi-Wei; Hurtado, Beatriz Elena Padilla; Danowitz, Ann; Wing, Rod A. and Zhang, Qifa. 2016. Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proc. Natl. Acad. Sci. U.S.A., Volume 113, no. 35 |
| spellingShingle | Zhang, Jianwei Chen, Ling-Ling Xing, Feng Kudrna, David A. Yao, Wen Copetti, Dario Mu, Ting Li, Weiming Song, Jia-Ming Xie, Weibo Lee, Seunghee Talag, Jayson Shao, Lin An, Yue Zhang, Chun-Liu Ouyang, Yidan Sun, Shuai Jiao, Wen-Biao Lv, Fang Du, Bogu Luo, Meizhong Maldonado, Carlos Ernesto Goicoechea, Jose Luis Xiong, Lizhong Wu, Changyin Xing, Yongzhong Zhou, Dao-Xiu Yu, Sibin Zhao, Yu Wang, Gongwei Yu, Yeisoo Luo, Yijie Zhou, Zhi-Wei Hurtado, Beatriz Elena Padilla Danowitz, Ann Wing, Rod A. Zhang, Qifa Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 |
| title | Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 |
| title_full | Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 |
| title_fullStr | Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 |
| title_full_unstemmed | Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 |
| title_short | Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 |
| title_sort | extensive sequence divergence between the reference genomes of two elite indica rice varieties zhenshan 97 and minghui 63 |
| url | https://hdl.handle.net/10568/165221 |
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