Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice
The related A genome species of the Oryza genus are the effective gene pool for rice. Here, we report draft genomes for two Australian wild A genome taxa: O. rufipogon‐like population, referred to as Taxon A, and O. meridionalis‐like population, referred to as Taxon B. These two taxa were sequenced...
| Autores principales: | , , , , , , , |
|---|---|
| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Wiley
2017
|
| Acceso en línea: | https://hdl.handle.net/10568/165111 |
| _version_ | 1855529218803236864 |
|---|---|
| author | Brozynska, Marta Copetti, Dario Furtado, Agnelo Wing, Rod A. Crayn, Darren Fox, Glen Ishikawa, Ryuji Henry, Robert J. |
| author_browse | Brozynska, Marta Copetti, Dario Crayn, Darren Fox, Glen Furtado, Agnelo Henry, Robert J. Ishikawa, Ryuji Wing, Rod A. |
| author_facet | Brozynska, Marta Copetti, Dario Furtado, Agnelo Wing, Rod A. Crayn, Darren Fox, Glen Ishikawa, Ryuji Henry, Robert J. |
| author_sort | Brozynska, Marta |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | The related A genome species of the Oryza genus are the effective gene pool for rice. Here, we report draft genomes for two Australian wild A genome taxa: O. rufipogon‐like population, referred to as Taxon A, and O. meridionalis‐like population, referred to as Taxon B. These two taxa were sequenced and assembled by integration of short‐ and long‐read next‐generation sequencing (NGS) data to create a genomic platform for a wider rice gene pool. Here, we report that, despite the distinct chloroplast genome, the nuclear genome of the Australian Taxon A has a sequence that is much closer to that of domesticated rice (O. sativa) than to the other Australian wild populations. Analysis of 4643 genes in the A genome clade showed that the Australian annual, O. meridionalis, and related perennial taxa have the most divergent (around 3 million years) genome sequences relative to domesticated rice. A test for admixture showed possible introgression into the Australian Taxon A (diverged around 1.6 million years ago) especially from the wild indica/O. nivara clade in Asia. These results demonstrate that northern Australia may be the centre of diversity of the A genome Oryza and suggest the possibility that this might also be the centre of origin of this group and represent an important resource for rice improvement. |
| format | Journal Article |
| id | CGSpace165111 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2017 |
| publishDateRange | 2017 |
| publishDateSort | 2017 |
| publisher | Wiley |
| publisherStr | Wiley |
| record_format | dspace |
| spelling | CGSpace1651112024-12-22T05:44:55Z Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice Brozynska, Marta Copetti, Dario Furtado, Agnelo Wing, Rod A. Crayn, Darren Fox, Glen Ishikawa, Ryuji Henry, Robert J. The related A genome species of the Oryza genus are the effective gene pool for rice. Here, we report draft genomes for two Australian wild A genome taxa: O. rufipogon‐like population, referred to as Taxon A, and O. meridionalis‐like population, referred to as Taxon B. These two taxa were sequenced and assembled by integration of short‐ and long‐read next‐generation sequencing (NGS) data to create a genomic platform for a wider rice gene pool. Here, we report that, despite the distinct chloroplast genome, the nuclear genome of the Australian Taxon A has a sequence that is much closer to that of domesticated rice (O. sativa) than to the other Australian wild populations. Analysis of 4643 genes in the A genome clade showed that the Australian annual, O. meridionalis, and related perennial taxa have the most divergent (around 3 million years) genome sequences relative to domesticated rice. A test for admixture showed possible introgression into the Australian Taxon A (diverged around 1.6 million years ago) especially from the wild indica/O. nivara clade in Asia. These results demonstrate that northern Australia may be the centre of diversity of the A genome Oryza and suggest the possibility that this might also be the centre of origin of this group and represent an important resource for rice improvement. 2017-06 2024-12-19T12:54:43Z 2024-12-19T12:54:43Z Journal Article https://hdl.handle.net/10568/165111 en Open Access Wiley Brozynska, Marta; Copetti, Dario; Furtado, Agnelo; Wing, Rod A.; Crayn, Darren; Fox, Glen; Ishikawa, Ryuji and Henry, Robert J. 2017. Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice. Plant Biotechnology Journal, Volume 15 no. 6 p. 765-774 |
| spellingShingle | Brozynska, Marta Copetti, Dario Furtado, Agnelo Wing, Rod A. Crayn, Darren Fox, Glen Ishikawa, Ryuji Henry, Robert J. Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice |
| title | Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice |
| title_full | Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice |
| title_fullStr | Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice |
| title_full_unstemmed | Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice |
| title_short | Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice |
| title_sort | sequencing of australian wild rice genomes reveals ancestral relationships with domesticated rice |
| url | https://hdl.handle.net/10568/165111 |
| work_keys_str_mv | AT brozynskamarta sequencingofaustralianwildricegenomesrevealsancestralrelationshipswithdomesticatedrice AT copettidario sequencingofaustralianwildricegenomesrevealsancestralrelationshipswithdomesticatedrice AT furtadoagnelo sequencingofaustralianwildricegenomesrevealsancestralrelationshipswithdomesticatedrice AT wingroda sequencingofaustralianwildricegenomesrevealsancestralrelationshipswithdomesticatedrice AT crayndarren sequencingofaustralianwildricegenomesrevealsancestralrelationshipswithdomesticatedrice AT foxglen sequencingofaustralianwildricegenomesrevealsancestralrelationshipswithdomesticatedrice AT ishikawaryuji sequencingofaustralianwildricegenomesrevealsancestralrelationshipswithdomesticatedrice AT henryrobertj sequencingofaustralianwildricegenomesrevealsancestralrelationshipswithdomesticatedrice |