From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives
Management and distribution of experimental data from prebreeding projects is important to ensure uptake of germplasm into breeding and research programs. Being able to access and share this data in standard formats is essential. The adoption of a common informatics platform for crops that may have...
| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Wiley
2021
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/164452 |
| _version_ | 1855518380537151488 |
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| author | Raubach, Sebastian Kilian, Benjamin Dreher, Kate Amri, Ahmed Bassi, Filippo M. Boukar, Ousmane Cook, Douglas Cruickshank, Alan Fatokun, Christian El Haddad, Noureddine Humphries, Alan Jordan, David Kehel, Zakaria Kumar, Shiv Labarosa, Sandy Jan Nguyen, Loi Huu Mace, Emma McCouch, Susan McNally, Ken Marshall, David F. Mikwa, Erick Owuor Milne, Iain Odeny, Damaris Achieng Plazas, Mariola Prohens, Jaime Rieseberg, Loren H. Schafleitner, Roland Sharma, Shivali Stephen, Gordon Tin, Huynh Quang Togola, Abou Warschefsky, Emily Werner, Peter Shaw, Paul D. |
| author_browse | Amri, Ahmed Bassi, Filippo M. Boukar, Ousmane Cook, Douglas Cruickshank, Alan Dreher, Kate El Haddad, Noureddine Fatokun, Christian Humphries, Alan Jordan, David Kehel, Zakaria Kilian, Benjamin Kumar, Shiv Labarosa, Sandy Jan Mace, Emma Marshall, David F. McCouch, Susan McNally, Ken Mikwa, Erick Owuor Milne, Iain Nguyen, Loi Huu Odeny, Damaris Achieng Plazas, Mariola Prohens, Jaime Raubach, Sebastian Rieseberg, Loren H. Schafleitner, Roland Sharma, Shivali Shaw, Paul D. Stephen, Gordon Tin, Huynh Quang Togola, Abou Warschefsky, Emily Werner, Peter |
| author_facet | Raubach, Sebastian Kilian, Benjamin Dreher, Kate Amri, Ahmed Bassi, Filippo M. Boukar, Ousmane Cook, Douglas Cruickshank, Alan Fatokun, Christian El Haddad, Noureddine Humphries, Alan Jordan, David Kehel, Zakaria Kumar, Shiv Labarosa, Sandy Jan Nguyen, Loi Huu Mace, Emma McCouch, Susan McNally, Ken Marshall, David F. Mikwa, Erick Owuor Milne, Iain Odeny, Damaris Achieng Plazas, Mariola Prohens, Jaime Rieseberg, Loren H. Schafleitner, Roland Sharma, Shivali Stephen, Gordon Tin, Huynh Quang Togola, Abou Warschefsky, Emily Werner, Peter Shaw, Paul D. |
| author_sort | Raubach, Sebastian |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Management and distribution of experimental data from prebreeding projects is important to ensure uptake of germplasm into breeding and research programs. Being able to access and share this data in standard formats is essential. The adoption of a common informatics platform for crops that may have limited resources brings economies of scale, allowing common informatics components to be used across multiple species. The close integration of such a platform with commonly used breeding software, visualization, and analysis tools reduces the barrier for entry to researchers and provides a common framework to facilitate collaborations and data sharing. This work presents significant updates to the Germinate platform and highlights its value in distributing prebreeding data for 14 crops as part of the project ‘Adapting Agriculture to Climate Change: Collecting, Protecting and Preparing Crop Wild Relatives’ (hereafter Crop Trust Crop Wild Relatives project) led by the Crop Trust (https://www.cwrdiversity.org). The addition of data on these species compliments data already publicly available in Germinate. We present a suite of updated Germinate features using examples from these crop species and their wild relatives. The use of Germinate within the Crop Trust Crop Wild Relatives project demonstrates the usefulness of the system and the benefits a shared informatics platform provides. These data resources provide a foundation on which breeding and research communities can develop additional online resources for their crops, harness new data as it becomes available, and benefit collectively from future developments of the Germinate platform. |
| format | Journal Article |
| id | CGSpace164452 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2021 |
| publishDateRange | 2021 |
| publishDateSort | 2021 |
| publisher | Wiley |
| publisherStr | Wiley |
| record_format | dspace |
| spelling | CGSpace1644522025-12-08T09:54:28Z From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives Raubach, Sebastian Kilian, Benjamin Dreher, Kate Amri, Ahmed Bassi, Filippo M. Boukar, Ousmane Cook, Douglas Cruickshank, Alan Fatokun, Christian El Haddad, Noureddine Humphries, Alan Jordan, David Kehel, Zakaria Kumar, Shiv Labarosa, Sandy Jan Nguyen, Loi Huu Mace, Emma McCouch, Susan McNally, Ken Marshall, David F. Mikwa, Erick Owuor Milne, Iain Odeny, Damaris Achieng Plazas, Mariola Prohens, Jaime Rieseberg, Loren H. Schafleitner, Roland Sharma, Shivali Stephen, Gordon Tin, Huynh Quang Togola, Abou Warschefsky, Emily Werner, Peter Shaw, Paul D. agronomy and crop science Management and distribution of experimental data from prebreeding projects is important to ensure uptake of germplasm into breeding and research programs. Being able to access and share this data in standard formats is essential. The adoption of a common informatics platform for crops that may have limited resources brings economies of scale, allowing common informatics components to be used across multiple species. The close integration of such a platform with commonly used breeding software, visualization, and analysis tools reduces the barrier for entry to researchers and provides a common framework to facilitate collaborations and data sharing. This work presents significant updates to the Germinate platform and highlights its value in distributing prebreeding data for 14 crops as part of the project ‘Adapting Agriculture to Climate Change: Collecting, Protecting and Preparing Crop Wild Relatives’ (hereafter Crop Trust Crop Wild Relatives project) led by the Crop Trust (https://www.cwrdiversity.org). The addition of data on these species compliments data already publicly available in Germinate. We present a suite of updated Germinate features using examples from these crop species and their wild relatives. The use of Germinate within the Crop Trust Crop Wild Relatives project demonstrates the usefulness of the system and the benefits a shared informatics platform provides. These data resources provide a foundation on which breeding and research communities can develop additional online resources for their crops, harness new data as it becomes available, and benefit collectively from future developments of the Germinate platform. 2021-05 2024-12-19T12:53:53Z 2024-12-19T12:53:53Z Journal Article https://hdl.handle.net/10568/164452 en Open Access Wiley Raubach, Sebastian; Kilian, Benjamin; Dreher, Kate; Amri, Ahmed; Bassi, Filippo M.; Boukar, Ousmane; Cook, Douglas; Cruickshank, Alan; Fatokun, Christian; El Haddad, Noureddine; Humphries, Alan; Jordan, David; Kehel, Zakaria; Kumar, Shiv; Labarosa, Sandy Jan; Nguyen, Loi Huu; Mace, Emma; McCouch, Susan; McNally, Ken; Marshall, David F.; Mikwa, Erick Owuor; Milne, Iain; Odeny, Damaris Achieng; Plazas, Mariola; Prohens, Jaime; Rieseberg, Loren H.; Schafleitner, Roland; Sharma, Shivali; Stephen, Gordon; Tin, Huynh Quang; Togola, Abou; Warschefsky, Emily; Werner, Peter; and Shaw, Paul D. 2020. From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives. Crop Science, Volume 61 no. 3 p. 1538-1566 |
| spellingShingle | agronomy and crop science Raubach, Sebastian Kilian, Benjamin Dreher, Kate Amri, Ahmed Bassi, Filippo M. Boukar, Ousmane Cook, Douglas Cruickshank, Alan Fatokun, Christian El Haddad, Noureddine Humphries, Alan Jordan, David Kehel, Zakaria Kumar, Shiv Labarosa, Sandy Jan Nguyen, Loi Huu Mace, Emma McCouch, Susan McNally, Ken Marshall, David F. Mikwa, Erick Owuor Milne, Iain Odeny, Damaris Achieng Plazas, Mariola Prohens, Jaime Rieseberg, Loren H. Schafleitner, Roland Sharma, Shivali Stephen, Gordon Tin, Huynh Quang Togola, Abou Warschefsky, Emily Werner, Peter Shaw, Paul D. From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives |
| title | From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives |
| title_full | From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives |
| title_fullStr | From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives |
| title_full_unstemmed | From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives |
| title_short | From bits to bites: advancement of the germinate platform to support genetic resources collections and pre‐breeding informatics for crop wild relatives |
| title_sort | from bits to bites advancement of the germinate platform to support genetic resources collections and pre breeding informatics for crop wild relatives |
| topic | agronomy and crop science |
| url | https://hdl.handle.net/10568/164452 |
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