Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics
A 1D/2D genome-wide association study strategy was adopted to investigate the genetic systems underlying the reciprocal adaptation of rice (Oryza sativa) and its bacterial pathogen, Xanthomonas oryzae pv. oryzae (Xoo) using the whole-genome sequencing and large-scale phenotyping data of 701 rice acc...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Oxford University Press
2021
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| Acceso en línea: | https://hdl.handle.net/10568/164257 |
| _version_ | 1855541529712525312 |
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| author | Zhang, Fan Hu, Zhiqiang Wu, Zhichao Lu, Jialing Shi, Yingyao Xu, Jianlong Wang, Xiyin Wang, Jinpeng Wang, Mingming Shi, Xiaorong Cui, Yanru Vera Cruz, Casiana Zhuo, Dalong Hu, Dandan Li, Min Wang, Wensheng Zhao, Xiuqin Zheng, Tianqing Fu, Binying Ali, Jauhar Zhou, Yongli Li, Zhikang |
| author_browse | Ali, Jauhar Cui, Yanru Fu, Binying Hu, Dandan Hu, Zhiqiang Li, Min Li, Zhikang Lu, Jialing Shi, Xiaorong Shi, Yingyao Vera Cruz, Casiana Wang, Jinpeng Wang, Mingming Wang, Wensheng Wang, Xiyin Wu, Zhichao Xu, Jianlong Zhang, Fan Zhao, Xiuqin Zheng, Tianqing Zhou, Yongli Zhuo, Dalong |
| author_facet | Zhang, Fan Hu, Zhiqiang Wu, Zhichao Lu, Jialing Shi, Yingyao Xu, Jianlong Wang, Xiyin Wang, Jinpeng Wang, Mingming Shi, Xiaorong Cui, Yanru Vera Cruz, Casiana Zhuo, Dalong Hu, Dandan Li, Min Wang, Wensheng Zhao, Xiuqin Zheng, Tianqing Fu, Binying Ali, Jauhar Zhou, Yongli Li, Zhikang |
| author_sort | Zhang, Fan |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | A 1D/2D genome-wide association study strategy was adopted to investigate the genetic systems underlying the reciprocal adaptation of rice (Oryza sativa) and its bacterial pathogen, Xanthomonas oryzae pv. oryzae (Xoo) using the whole-genome sequencing and large-scale phenotyping data of 701 rice accessions and 23 diverse Xoo strains. Forty-seven Xoo virulence-related genes and 318 rice quantitative resistance genes (QR-genes) mainly located in 41 genomic regions, and genome-wide interactions between the detected virulence-related genes and QR genes were identified, including well-known resistance genes/virulence genes plus many previously uncharacterized ones. The relationship between rice and Xoo was characterized by strong differentiation among Xoo races corresponding to the subspecific differentiation of rice, by strong shifts toward increased resistance/virulence of rice/Xoo populations and by rich genetic diversity at the detected rice QR-genes and Xoo virulence genes, and by genome-wide interactions between many rice QR-genes and Xoo virulence genes in a multiple-to-multiple manner, presumably resulting either from direct protein–protein interactions or from genetic epistasis. The observed complex genetic interaction system between rice and Xoo likely exists in other crop–pathogen systems that would maintain high levels of diversity at their QR-loci/virulence-loci, resulting in dynamic coevolutionary consequences during their reciprocal adaptation. |
| format | Journal Article |
| id | CGSpace164257 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2021 |
| publishDateRange | 2021 |
| publishDateSort | 2021 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace1642572024-12-22T05:45:03Z Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics Zhang, Fan Hu, Zhiqiang Wu, Zhichao Lu, Jialing Shi, Yingyao Xu, Jianlong Wang, Xiyin Wang, Jinpeng Wang, Mingming Shi, Xiaorong Cui, Yanru Vera Cruz, Casiana Zhuo, Dalong Hu, Dandan Li, Min Wang, Wensheng Zhao, Xiuqin Zheng, Tianqing Fu, Binying Ali, Jauhar Zhou, Yongli Li, Zhikang cell biology plant science A 1D/2D genome-wide association study strategy was adopted to investigate the genetic systems underlying the reciprocal adaptation of rice (Oryza sativa) and its bacterial pathogen, Xanthomonas oryzae pv. oryzae (Xoo) using the whole-genome sequencing and large-scale phenotyping data of 701 rice accessions and 23 diverse Xoo strains. Forty-seven Xoo virulence-related genes and 318 rice quantitative resistance genes (QR-genes) mainly located in 41 genomic regions, and genome-wide interactions between the detected virulence-related genes and QR genes were identified, including well-known resistance genes/virulence genes plus many previously uncharacterized ones. The relationship between rice and Xoo was characterized by strong differentiation among Xoo races corresponding to the subspecific differentiation of rice, by strong shifts toward increased resistance/virulence of rice/Xoo populations and by rich genetic diversity at the detected rice QR-genes and Xoo virulence genes, and by genome-wide interactions between many rice QR-genes and Xoo virulence genes in a multiple-to-multiple manner, presumably resulting either from direct protein–protein interactions or from genetic epistasis. The observed complex genetic interaction system between rice and Xoo likely exists in other crop–pathogen systems that would maintain high levels of diversity at their QR-loci/virulence-loci, resulting in dynamic coevolutionary consequences during their reciprocal adaptation. 2021-08-31 2024-12-19T12:53:39Z 2024-12-19T12:53:39Z Journal Article https://hdl.handle.net/10568/164257 en Open Access Oxford University Press Zhang, Fan; Hu, Zhiqiang; Wu, Zhichao; Lu, Jialing; Shi, Yingyao; Xu, Jianlong; Wang, Xiyin; Wang, Jinpeng; Zhang, Fan; Wang, Mingming; Shi, Xiaorong; Cui, Yanru; Vera Cruz, Casiana; Zhuo, Dalong; Hu, Dandan; Li, Min; Wang, Wensheng; Zhao, Xiuqin; Zheng, Tianqing; Fu, Binying; Ali, Jauhar; Zhou, Yongli and Li, Zhikang. 2021. Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics. The Plant Cell, Volume 33 no. 8 p. 2538-2561 |
| spellingShingle | cell biology plant science Zhang, Fan Hu, Zhiqiang Wu, Zhichao Lu, Jialing Shi, Yingyao Xu, Jianlong Wang, Xiyin Wang, Jinpeng Wang, Mingming Shi, Xiaorong Cui, Yanru Vera Cruz, Casiana Zhuo, Dalong Hu, Dandan Li, Min Wang, Wensheng Zhao, Xiuqin Zheng, Tianqing Fu, Binying Ali, Jauhar Zhou, Yongli Li, Zhikang Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics |
| title | Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics |
| title_full | Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics |
| title_fullStr | Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics |
| title_full_unstemmed | Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics |
| title_short | Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics |
| title_sort | reciprocal adaptation of rice and xanthomonas oryzae pv oryzae cross species 2d gwas reveals the underlying genetics |
| topic | cell biology plant science |
| url | https://hdl.handle.net/10568/164257 |
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