Insight into the genome data of commercially important giant kelp Macrocystis pyrifera
Kelps or brown algae are a wide group of marine macroalgae that play an important role in aquatic ecosystems and generally have high commercial value. To facilitate brown algal studies, we report the complete genome sequence of the largest kelp Macrocystis pyrifera. The whole genome is ∼428 Mb in si...
| Autores principales: | , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Elsevier
2022
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| Acceso en línea: | https://hdl.handle.net/10568/164062 |
| _version_ | 1855530612392198144 |
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| author | Paul, Sujay Salavarría, Erika García, Katherine Reyes-Calderón, Alonso Gil-Kodaka, Patricia Samolski, Ilanit Srivastava, Aashish Bandyopadhyay, Anindya Villena, Gretty K. |
| author_browse | Bandyopadhyay, Anindya García, Katherine Gil-Kodaka, Patricia Paul, Sujay Reyes-Calderón, Alonso Salavarría, Erika Samolski, Ilanit Srivastava, Aashish Villena, Gretty K. |
| author_facet | Paul, Sujay Salavarría, Erika García, Katherine Reyes-Calderón, Alonso Gil-Kodaka, Patricia Samolski, Ilanit Srivastava, Aashish Bandyopadhyay, Anindya Villena, Gretty K. |
| author_sort | Paul, Sujay |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Kelps or brown algae are a wide group of marine macroalgae that play an important role in aquatic ecosystems and generally have high commercial value. To facilitate brown algal studies, we report the complete genome sequence of the largest kelp Macrocystis pyrifera. The whole genome is ∼428 Mb in size, comprises 44,307 scaffolds with an average GC content of 47%, and is predicted to contain a total of 24,778 genes. 18S sequence-based phylogenetic analysis revealed that littoral brown seaweed Scytosiphon lomentaria is the closest species of M. pyrifera. Numerous genes identified in this dataset are involved in genetic information processing, signaling, and cellular processes, carbohydrate metabolism, and terpenoids biosynthesis. |
| format | Journal Article |
| id | CGSpace164062 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Elsevier |
| publisherStr | Elsevier |
| record_format | dspace |
| spelling | CGSpace1640622024-12-19T14:12:58Z Insight into the genome data of commercially important giant kelp Macrocystis pyrifera Paul, Sujay Salavarría, Erika García, Katherine Reyes-Calderón, Alonso Gil-Kodaka, Patricia Samolski, Ilanit Srivastava, Aashish Bandyopadhyay, Anindya Villena, Gretty K. Kelps or brown algae are a wide group of marine macroalgae that play an important role in aquatic ecosystems and generally have high commercial value. To facilitate brown algal studies, we report the complete genome sequence of the largest kelp Macrocystis pyrifera. The whole genome is ∼428 Mb in size, comprises 44,307 scaffolds with an average GC content of 47%, and is predicted to contain a total of 24,778 genes. 18S sequence-based phylogenetic analysis revealed that littoral brown seaweed Scytosiphon lomentaria is the closest species of M. pyrifera. Numerous genes identified in this dataset are involved in genetic information processing, signaling, and cellular processes, carbohydrate metabolism, and terpenoids biosynthesis. 2022-06 2024-12-19T12:53:23Z 2024-12-19T12:53:23Z Journal Article https://hdl.handle.net/10568/164062 en Open Access Elsevier Paul, Sujay; Salavarría, Erika; García, Katherine; Reyes-Calderón, Alonso; Gil-Kodaka, Patricia; Samolski, Ilanit; Srivastava, Aashish; Bandyopadhyay, Anindya and Villena, Gretty K. 2022. Insight into the genome data of commercially important giant kelp Macrocystis pyrifera. Data in Brief, Volume 42 p. 108068 |
| spellingShingle | Paul, Sujay Salavarría, Erika García, Katherine Reyes-Calderón, Alonso Gil-Kodaka, Patricia Samolski, Ilanit Srivastava, Aashish Bandyopadhyay, Anindya Villena, Gretty K. Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
| title | Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
| title_full | Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
| title_fullStr | Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
| title_full_unstemmed | Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
| title_short | Insight into the genome data of commercially important giant kelp Macrocystis pyrifera |
| title_sort | insight into the genome data of commercially important giant kelp macrocystis pyrifera |
| url | https://hdl.handle.net/10568/164062 |
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