High-quality genome resource of Ustilaginoidea virens (UV2_4G), causal agent of an emerging false smut disease in rice
Ustilaginoidea virens is the fungal pathogen causing an emerging false smut disease that affects crop yield as well as deteriorates quality of the grains by producing mycotoxins. A high quality genome of U. virens isolate UV2_4G was sequenced using Nanopore and Illumina HiSeq 2,000 sequencing platfo...
| Autores principales: | , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Scientific Societies
2023
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| Acceso en línea: | https://hdl.handle.net/10568/163976 |
| _version_ | 1855519283417710592 |
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| author | Bashyal, Bishnu Maya Yadav, Gaurav Kumar Parmar, Pooja Sunani, Sunil Kumar Aggarwal, Shweta Gopala Krishnan, S. Kumar, Atul Zaidi, Najam Waris Aggarwal, Rashmi |
| author_browse | Aggarwal, Rashmi Aggarwal, Shweta Bashyal, Bishnu Maya Gopala Krishnan, S. Kumar, Atul Parmar, Pooja Sunani, Sunil Kumar Yadav, Gaurav Kumar Zaidi, Najam Waris |
| author_facet | Bashyal, Bishnu Maya Yadav, Gaurav Kumar Parmar, Pooja Sunani, Sunil Kumar Aggarwal, Shweta Gopala Krishnan, S. Kumar, Atul Zaidi, Najam Waris Aggarwal, Rashmi |
| author_sort | Bashyal, Bishnu Maya |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Ustilaginoidea virens is the fungal pathogen causing an emerging false smut disease that affects crop yield as well as deteriorates quality of the grains by producing mycotoxins. A high quality genome of U. virens isolate UV2_4G was sequenced using Nanopore and Illumina HiSeq 2,000 sequencing platforms. The total assembled genome of Indian isolate UV2_4G was 35.9 Mb, which comprised 89 scaffolds with N50 of 700,296 bp. A total of 358,697 variants were identified in the genome, out of which 355,173 were SNPs and 3,524 were INDELS. Further, 7,390 SSRs belonging to different repeat types were also identified in the genome. Out of 7,444 proteins predicted, 7,206 were functionally annotated. A total of 1,307 CAZymes, 501 signal peptides, 1,876 effectors, and 2,709 genes involved in host-pathogen interactions were identified. Comparative analysis revealed isolate UV2_4G is distinct with 31 unique clusters and placed distantly in phylogenetic analysis. Taken together, this high-quality genome assembly and sequence annotation resource can give an improved insight for characterizing the biological and pathogenic mechanisms of U. virens. |
| format | Journal Article |
| id | CGSpace163976 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2023 |
| publishDateRange | 2023 |
| publishDateSort | 2023 |
| publisher | Scientific Societies |
| publisherStr | Scientific Societies |
| record_format | dspace |
| spelling | CGSpace1639762025-12-08T09:54:28Z High-quality genome resource of Ustilaginoidea virens (UV2_4G), causal agent of an emerging false smut disease in rice Bashyal, Bishnu Maya Yadav, Gaurav Kumar Parmar, Pooja Sunani, Sunil Kumar Aggarwal, Shweta Gopala Krishnan, S. Kumar, Atul Zaidi, Najam Waris Aggarwal, Rashmi agents genomes grain quality mycotoxins ustilaginoidea Ustilaginoidea virens is the fungal pathogen causing an emerging false smut disease that affects crop yield as well as deteriorates quality of the grains by producing mycotoxins. A high quality genome of U. virens isolate UV2_4G was sequenced using Nanopore and Illumina HiSeq 2,000 sequencing platforms. The total assembled genome of Indian isolate UV2_4G was 35.9 Mb, which comprised 89 scaffolds with N50 of 700,296 bp. A total of 358,697 variants were identified in the genome, out of which 355,173 were SNPs and 3,524 were INDELS. Further, 7,390 SSRs belonging to different repeat types were also identified in the genome. Out of 7,444 proteins predicted, 7,206 were functionally annotated. A total of 1,307 CAZymes, 501 signal peptides, 1,876 effectors, and 2,709 genes involved in host-pathogen interactions were identified. Comparative analysis revealed isolate UV2_4G is distinct with 31 unique clusters and placed distantly in phylogenetic analysis. Taken together, this high-quality genome assembly and sequence annotation resource can give an improved insight for characterizing the biological and pathogenic mechanisms of U. virens. 2023-03-01 2024-12-19T12:53:15Z 2024-12-19T12:53:15Z Journal Article https://hdl.handle.net/10568/163976 en Scientific Societies Bashyal, Bishnu Maya; Yadav, Gaurav Kumar; Parmar, Pooja; Sunani, Sunil Kumar; Aggarwal, Shweta; Gopala Krishnan, S.; Kumar, Atul; Zaidi, Najam Waris and Aggarwal, Rashmi. 2023. High-quality genome resource of Ustilaginoidea virens (UV2_4G), causal agent of an emerging false smut disease in rice. Plant Disease, Volume 107 no. 3 p. 896-898 |
| spellingShingle | agents genomes grain quality mycotoxins ustilaginoidea Bashyal, Bishnu Maya Yadav, Gaurav Kumar Parmar, Pooja Sunani, Sunil Kumar Aggarwal, Shweta Gopala Krishnan, S. Kumar, Atul Zaidi, Najam Waris Aggarwal, Rashmi High-quality genome resource of Ustilaginoidea virens (UV2_4G), causal agent of an emerging false smut disease in rice |
| title | High-quality genome resource of Ustilaginoidea virens (UV2_4G), causal agent of an emerging false smut disease in rice |
| title_full | High-quality genome resource of Ustilaginoidea virens (UV2_4G), causal agent of an emerging false smut disease in rice |
| title_fullStr | High-quality genome resource of Ustilaginoidea virens (UV2_4G), causal agent of an emerging false smut disease in rice |
| title_full_unstemmed | High-quality genome resource of Ustilaginoidea virens (UV2_4G), causal agent of an emerging false smut disease in rice |
| title_short | High-quality genome resource of Ustilaginoidea virens (UV2_4G), causal agent of an emerging false smut disease in rice |
| title_sort | high quality genome resource of ustilaginoidea virens uv2 4g causal agent of an emerging false smut disease in rice |
| topic | agents genomes grain quality mycotoxins ustilaginoidea |
| url | https://hdl.handle.net/10568/163976 |
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