Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57
By using PacBio HiFi technology, we produced over 700 Gb of long-read sequencing (LRS) raw data; and by using Illumina paired-end whole-genome shotgun (WGS) sequencing technology, we generated more than 70 Gb of short-read sequencing (SRS) data. With LRS data, we assembled one genome and then genera...
| Autores principales: | , , , , , , , , , , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Springer
2024
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| Acceso en línea: | https://hdl.handle.net/10568/163833 |
| _version_ | 1855535366889537536 |
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| author | Lei, Yuanbao Zhang, Yunjiang Xu, Linyun Ma, Wendong Zhou, Ziqi Li, Jie Quan, Pengyu Faruquee, Muhiuddin Yang, Dechen Zhang, Fan Zhou, Yongli Quan, Guangjun Zhao, Xiuqin Wang, Wensheng Liu, Bailong Li, Zhikang Xu, Jianlong Zheng, Tianqing |
| author_browse | Faruquee, Muhiuddin Lei, Yuanbao Li, Jie Li, Zhikang Liu, Bailong Ma, Wendong Quan, Guangjun Quan, Pengyu Wang, Wensheng Xu, Jianlong Xu, Linyun Yang, Dechen Zhang, Fan Zhang, Yunjiang Zhao, Xiuqin Zheng, Tianqing Zhou, Yongli Zhou, Ziqi |
| author_facet | Lei, Yuanbao Zhang, Yunjiang Xu, Linyun Ma, Wendong Zhou, Ziqi Li, Jie Quan, Pengyu Faruquee, Muhiuddin Yang, Dechen Zhang, Fan Zhou, Yongli Quan, Guangjun Zhao, Xiuqin Wang, Wensheng Liu, Bailong Li, Zhikang Xu, Jianlong Zheng, Tianqing |
| author_sort | Lei, Yuanbao |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | By using PacBio HiFi technology, we produced over 700 Gb of long-read sequencing (LRS) raw data; and by using Illumina paired-end whole-genome shotgun (WGS) sequencing technology, we generated more than 70 Gb of short-read sequencing (SRS) data. With LRS data, we assembled one genome and then generate a set of annotation data for an early-matured Geng/japonica glutinous rice mega variety genome, Longgeng 57 (LG57), which carries multiple elite traits including good grain quality and wide adaptability. Together with the SRS data from three parents of LG57, pedigree genome variations were called for three representative types of genes. These data sets can be used for deep variation mining, aid in the discovery of new insights into genome structure, function, and evolution, and help to provide essential support to biological research in general. |
| format | Journal Article |
| id | CGSpace163833 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2024 |
| publishDateRange | 2024 |
| publishDateSort | 2024 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace1638332024-12-19T14:13:18Z Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 Lei, Yuanbao Zhang, Yunjiang Xu, Linyun Ma, Wendong Zhou, Ziqi Li, Jie Quan, Pengyu Faruquee, Muhiuddin Yang, Dechen Zhang, Fan Zhou, Yongli Quan, Guangjun Zhao, Xiuqin Wang, Wensheng Liu, Bailong Li, Zhikang Xu, Jianlong Zheng, Tianqing By using PacBio HiFi technology, we produced over 700 Gb of long-read sequencing (LRS) raw data; and by using Illumina paired-end whole-genome shotgun (WGS) sequencing technology, we generated more than 70 Gb of short-read sequencing (SRS) data. With LRS data, we assembled one genome and then generate a set of annotation data for an early-matured Geng/japonica glutinous rice mega variety genome, Longgeng 57 (LG57), which carries multiple elite traits including good grain quality and wide adaptability. Together with the SRS data from three parents of LG57, pedigree genome variations were called for three representative types of genes. These data sets can be used for deep variation mining, aid in the discovery of new insights into genome structure, function, and evolution, and help to provide essential support to biological research in general. 2024-02-22 2024-12-19T12:53:04Z 2024-12-19T12:53:04Z Journal Article https://hdl.handle.net/10568/163833 en Open Access Springer Lei, Y., Zhang, Y., Xu, L., Ma, W., Zhou, Z., Li, J., Quan, P., Faruquee, M., Yang, D., Zhang, F., Zhou, Y., Quan, G., Zhao, X., Wang, W., Liu, B., Li, Z., Xu, J., & Zheng, T. (2024). Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57. Scientific Data, 11(1). https://doi.org/10.1038/s41597-024-03057-x |
| spellingShingle | Lei, Yuanbao Zhang, Yunjiang Xu, Linyun Ma, Wendong Zhou, Ziqi Li, Jie Quan, Pengyu Faruquee, Muhiuddin Yang, Dechen Zhang, Fan Zhou, Yongli Quan, Guangjun Zhao, Xiuqin Wang, Wensheng Liu, Bailong Li, Zhikang Xu, Jianlong Zheng, Tianqing Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title | Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title_full | Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title_fullStr | Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title_full_unstemmed | Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title_short | Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title_sort | pedigree genome data of an early matured geng japonica glutinous rice mega variety longgeng 57 |
| url | https://hdl.handle.net/10568/163833 |
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