A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset

Background Single-nucleotide polymorphisms (SNPs) are the most widely used form of molecular genetic variation studies. As reference genomes and resequencing data sets expand exponentially, tools must be in place to call SNPs at a similar pace. The genome analysis toolkit (GATK) is one of the most w...

Full description

Bibliographic Details

Main Authors:	Zhou, Yong, Kathiresan, Nagarajan, Yu, Zhichao, Rivera, Luis F., Yang, Yujian, Thimma, Manjula, Manickam, Keerthana, Chebotarov, Dmytro, Mauleon, Ramil, Chougule, Kapeel, Wei, Sharon, Gao, Tingting, Green, Carl D., Zuccolo, Andrea, Xie, Weibo, Ware, Doreen, Zhang, Jianwei, McNally, Kenneth L., Wing, Rod A.
Format:	Journal Article
Language:	Inglés
Published:	Springer 2024
Subjects:	single nucleotide polymorphisms genomes rice sorghum maize soybeans food crops
Online Access:	https://hdl.handle.net/10568/163079