Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (<em>Cenchrus ciliaris</em>)
This dataset presents 7,506 SNP markers (genotype calls "0", "1" and "2) and 8,345 silicoDArT markers (presence/absence, calls "0" and "1), each on 185 accessions of <em>Cenchrus ciliaris</em>, aka. buffel grass (csv list attached). In both xlsx files, missing genotype calls are encoded "-". SNP ca...
| Main Authors: | , |
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| Format: | Conjunto de datos |
| Language: | Inglés |
| Published: |
2024
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/139656 |
| _version_ | 1855524848442277888 |
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| author | Negawo, Alemayehu T. Jones, Chris |
| author_browse | Jones, Chris Negawo, Alemayehu T. |
| author_facet | Negawo, Alemayehu T. Jones, Chris |
| author_sort | Negawo, Alemayehu T. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | This dataset presents 7,506 SNP markers (genotype calls "0", "1" and "2) and 8,345 silicoDArT markers (presence/absence, calls "0" and "1), each on 185 accessions of <em>Cenchrus ciliaris</em>, aka. buffel grass (csv list attached). In both xlsx files, missing genotype calls are encoded "-".
SNP calls are encoded as follows: 0 = homozygote in the reference allele, 1 = homozygote in the alternative (SNP) allele, 2 = heterozygote.
This GBS information pertains to buffel grass i.e. <em>Cenchrus ciliaris</em> (aka. <em>Pennisetum ciliare</em>), but any mapping information, when present, relates the markers to <em>Setaria italica</em> (foxtail millet) in the "Setaria_italica_v2.0" genome assembly of its Yugu1 strain, with INSDC identifier GCA_000263155.2. |
| format | Conjunto de datos |
| id | CGSpace139656 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2024 |
| publishDateRange | 2024 |
| publishDateSort | 2024 |
| record_format | dspace |
| spelling | CGSpace1396562025-12-08T09:54:28Z Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (<em>Cenchrus ciliaris</em>) Negawo, Alemayehu T. Jones, Chris genotyping-by-sequencing buffel grass (cenchrus) buffel grass (cenchrus ciliaris l.) dartseq markers dartseq analysis This dataset presents 7,506 SNP markers (genotype calls "0", "1" and "2) and 8,345 silicoDArT markers (presence/absence, calls "0" and "1), each on 185 accessions of <em>Cenchrus ciliaris</em>, aka. buffel grass (csv list attached). In both xlsx files, missing genotype calls are encoded "-". SNP calls are encoded as follows: 0 = homozygote in the reference allele, 1 = homozygote in the alternative (SNP) allele, 2 = heterozygote. This GBS information pertains to buffel grass i.e. <em>Cenchrus ciliaris</em> (aka. <em>Pennisetum ciliare</em>), but any mapping information, when present, relates the markers to <em>Setaria italica</em> (foxtail millet) in the "Setaria_italica_v2.0" genome assembly of its Yugu1 strain, with INSDC identifier GCA_000263155.2. 2024-02-26T13:08:52Z 2024-02-26T13:08:52Z Dataset https://hdl.handle.net/10568/139656 en https://doi.org/10.3390/agriculture14020257 https://doi.org/10.3390/d12030088 Open Access Negawo, A.T. and Chris, J. (26/2/2024). Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (<em>Cenchrus ciliaris</em>) [Genotyping-by-sequencing (GBS) dataset]. |
| spellingShingle | genotyping-by-sequencing buffel grass (cenchrus) buffel grass (cenchrus ciliaris l.) dartseq markers dartseq analysis Negawo, Alemayehu T. Jones, Chris Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (<em>Cenchrus ciliaris</em>) |
| title | Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (<em>Cenchrus ciliaris</em>) |
| title_full | Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (<em>Cenchrus ciliaris</em>) |
| title_fullStr | Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (<em>Cenchrus ciliaris</em>) |
| title_full_unstemmed | Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (<em>Cenchrus ciliaris</em>) |
| title_short | Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (<em>Cenchrus ciliaris</em>) |
| title_sort | genotyping by sequencing gbs dataset for 185 accessions of buffel grass em cenchrus ciliaris em |
| topic | genotyping-by-sequencing buffel grass (cenchrus) buffel grass (cenchrus ciliaris l.) dartseq markers dartseq analysis |
| url | https://hdl.handle.net/10568/139656 |
| work_keys_str_mv | AT negawoalemayehut genotypingbysequencinggbsdatasetfor185accessionsofbuffelgrassemcenchrusciliarisem AT joneschris genotypingbysequencinggbsdatasetfor185accessionsofbuffelgrassemcenchrusciliarisem |