Agroecologies defined by species distribution models improve model fit of genotype by environment interactions to identify the best performing chicken breeds for smallholder systems
Animal performance is an outcome of genetic effects, environmental influences, and their interaction. Understanding the influences of the environment on performance is important to identify the right breeds for a given environment. Agroecological zonation is commonly used to classify environments an...
| Autores principales: | , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Frontiers Media
2023
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/135204 |
| _version_ | 1855521356028837888 |
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| author | Getachew, Fasil Komen, Hans Dessie, Tadelle Hanotte, Olivier H. Kemp, Stephen J. Worku, Setegn Bastiaanssen, Wim G.M. |
| author_browse | Bastiaanssen, Wim G.M. Dessie, Tadelle Getachew, Fasil Hanotte, Olivier H. Kemp, Stephen J. Komen, Hans Worku, Setegn |
| author_facet | Getachew, Fasil Komen, Hans Dessie, Tadelle Hanotte, Olivier H. Kemp, Stephen J. Worku, Setegn Bastiaanssen, Wim G.M. |
| author_sort | Getachew, Fasil |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Animal performance is an outcome of genetic effects, environmental influences, and their interaction. Understanding the influences of the environment on performance is important to identify the right breeds for a given environment. Agroecological zonation is commonly used to classify environments and compare the performance of breeds before their wider introduction into a new environment. Environmental classes, also referred to as agroecologies, are traditionally defined based on agronomically important environmental predictors. We hypothesized that our own classification of agroecologies for livestock at a species level and incorporating the most important environmental predictors may improve genotype by environment interactions (GxE) estimations over conventional methodology. We collected growth performance data on improved chicken breeds distributed to multiple environments in Ethiopia. We applied species distribution models (SDMs) to identify the most relevant environmental predictors and to group chicken performance testing sites into agroecologies. We fitted linear mixed-effects models (LMM) to make model comparisons between conventional and SDM-defined agroecologies. Then we used Generalized Additive Models (GAMs) to visualize the influences of SDM-identified environmental predictors on the live body weight of chickens at species level. The model fit in LMM for GxE prediction improved when agroecologies were defined based on SDM-identified environmental predictors. Partial dependence plots (PDPs) produced by GAMs showed complex relationships between environmental predictors and body weight. Our findings suggest that multi-environment performance evaluations of candidate breeds should be based on SDM-defined environmental classes or agroecologies. Moreover, our study shows that GAMs are well-suited to visualizing the influences of bioclimatic factors on livestock performance. |
| format | Journal Article |
| id | CGSpace135204 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2023 |
| publishDateRange | 2023 |
| publishDateSort | 2023 |
| publisher | Frontiers Media |
| publisherStr | Frontiers Media |
| record_format | dspace |
| spelling | CGSpace1352042025-12-08T10:29:22Z Agroecologies defined by species distribution models improve model fit of genotype by environment interactions to identify the best performing chicken breeds for smallholder systems Getachew, Fasil Komen, Hans Dessie, Tadelle Hanotte, Olivier H. Kemp, Stephen J. Worku, Setegn Bastiaanssen, Wim G.M. agroecology breeding chicken breeds genetics genotypes smallholders chickens Animal performance is an outcome of genetic effects, environmental influences, and their interaction. Understanding the influences of the environment on performance is important to identify the right breeds for a given environment. Agroecological zonation is commonly used to classify environments and compare the performance of breeds before their wider introduction into a new environment. Environmental classes, also referred to as agroecologies, are traditionally defined based on agronomically important environmental predictors. We hypothesized that our own classification of agroecologies for livestock at a species level and incorporating the most important environmental predictors may improve genotype by environment interactions (GxE) estimations over conventional methodology. We collected growth performance data on improved chicken breeds distributed to multiple environments in Ethiopia. We applied species distribution models (SDMs) to identify the most relevant environmental predictors and to group chicken performance testing sites into agroecologies. We fitted linear mixed-effects models (LMM) to make model comparisons between conventional and SDM-defined agroecologies. Then we used Generalized Additive Models (GAMs) to visualize the influences of SDM-identified environmental predictors on the live body weight of chickens at species level. The model fit in LMM for GxE prediction improved when agroecologies were defined based on SDM-identified environmental predictors. Partial dependence plots (PDPs) produced by GAMs showed complex relationships between environmental predictors and body weight. Our findings suggest that multi-environment performance evaluations of candidate breeds should be based on SDM-defined environmental classes or agroecologies. Moreover, our study shows that GAMs are well-suited to visualizing the influences of bioclimatic factors on livestock performance. 2023-12-07 2023-12-11T15:40:08Z 2023-12-11T15:40:08Z Journal Article https://hdl.handle.net/10568/135204 en Open Access Frontiers Media Getachew, F., Komen, H., Dessie, T., Hanotte, O., Kemp, S., Worku, S. and Bastiaansen, J.W.M. 2023. Agroecologies defined by species distribution models improve model fit of genotype by environment interactions to identify the best performing chicken breeds for smallholder systems. Frontiers in Sustainable Food Systems. |
| spellingShingle | agroecology breeding chicken breeds genetics genotypes smallholders chickens Getachew, Fasil Komen, Hans Dessie, Tadelle Hanotte, Olivier H. Kemp, Stephen J. Worku, Setegn Bastiaanssen, Wim G.M. Agroecologies defined by species distribution models improve model fit of genotype by environment interactions to identify the best performing chicken breeds for smallholder systems |
| title | Agroecologies defined by species distribution models improve model fit of genotype by environment interactions to identify the best performing chicken breeds for smallholder systems |
| title_full | Agroecologies defined by species distribution models improve model fit of genotype by environment interactions to identify the best performing chicken breeds for smallholder systems |
| title_fullStr | Agroecologies defined by species distribution models improve model fit of genotype by environment interactions to identify the best performing chicken breeds for smallholder systems |
| title_full_unstemmed | Agroecologies defined by species distribution models improve model fit of genotype by environment interactions to identify the best performing chicken breeds for smallholder systems |
| title_short | Agroecologies defined by species distribution models improve model fit of genotype by environment interactions to identify the best performing chicken breeds for smallholder systems |
| title_sort | agroecologies defined by species distribution models improve model fit of genotype by environment interactions to identify the best performing chicken breeds for smallholder systems |
| topic | agroecology breeding chicken breeds genetics genotypes smallholders chickens |
| url | https://hdl.handle.net/10568/135204 |
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