Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel
We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. In silico annotati...
| Main Authors: | , , , , , , , , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
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Springer
2015
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| Online Access: | https://hdl.handle.net/10568/129569 |
| _version_ | 1855536197357535232 |
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| author | Zubair, Saima Fischer, Anne Liljander, Anne M. Meens, Jochen Hegerman, Jan Gourlé, Hadrien Bishop, Richard P. Roebbelen, Ina Younan, Mario Mustafa, Mudassir Imran Mushtaq, Mamoona Bongcam-Rudloff, Erik Jores, Joerg |
| author_browse | Bishop, Richard P. Bongcam-Rudloff, Erik Fischer, Anne Gourlé, Hadrien Hegerman, Jan Jores, Joerg Liljander, Anne M. Meens, Jochen Mushtaq, Mamoona Mustafa, Mudassir Imran Roebbelen, Ina Younan, Mario Zubair, Saima |
| author_facet | Zubair, Saima Fischer, Anne Liljander, Anne M. Meens, Jochen Hegerman, Jan Gourlé, Hadrien Bishop, Richard P. Roebbelen, Ina Younan, Mario Mustafa, Mudassir Imran Mushtaq, Mamoona Bongcam-Rudloff, Erik Jores, Joerg |
| author_sort | Zubair, Saima |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. In silico annotation predicted 2755 protein-encoding genes and 76 non-coding genes. This isolate belongs to MLST sequence type 30 (ST30). Phylogenetic analysis based on a subset of 283 core genes revealed that it falls within the human clonal complex 30 (CC30) S. aureus isolate cluster but is genetically distinct. About 79 % of the protein encoding genes are part of the CC30 core genome (genes common to all CC30 S. aureus isolates), ~18 % were within the variable genome (shared among multiple but not all isolates) and ~ 3 % were found only in the genome of the camel isolate. Among the 85 isolate-specific genes, 79 were located within putative phages and pathogenicity islands. Protein encoding genes associated with bacterial adhesion, and secretory proteins that are essential components of the type VII secretion system were also identified. The complete genome sequence of S. aureus strain ILRI_Eymole1/1 has been deposited in the European Nucleotide Archive under the accession no LN626917.1. |
| format | Journal Article |
| id | CGSpace129569 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2015 |
| publishDateRange | 2015 |
| publishDateSort | 2015 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace1295692024-08-27T10:36:53Z Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel Zubair, Saima Fischer, Anne Liljander, Anne M. Meens, Jochen Hegerman, Jan Gourlé, Hadrien Bishop, Richard P. Roebbelen, Ina Younan, Mario Mustafa, Mudassir Imran Mushtaq, Mamoona Bongcam-Rudloff, Erik Jores, Joerg staphylococcus We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. In silico annotation predicted 2755 protein-encoding genes and 76 non-coding genes. This isolate belongs to MLST sequence type 30 (ST30). Phylogenetic analysis based on a subset of 283 core genes revealed that it falls within the human clonal complex 30 (CC30) S. aureus isolate cluster but is genetically distinct. About 79 % of the protein encoding genes are part of the CC30 core genome (genes common to all CC30 S. aureus isolates), ~18 % were within the variable genome (shared among multiple but not all isolates) and ~ 3 % were found only in the genome of the camel isolate. Among the 85 isolate-specific genes, 79 were located within putative phages and pathogenicity islands. Protein encoding genes associated with bacterial adhesion, and secretory proteins that are essential components of the type VII secretion system were also identified. The complete genome sequence of S. aureus strain ILRI_Eymole1/1 has been deposited in the European Nucleotide Archive under the accession no LN626917.1. 2015-12 2023-03-10T14:39:39Z 2023-03-10T14:39:39Z Journal Article https://hdl.handle.net/10568/129569 en Open Access Springer Zubair, Saima; Fischer, Anne; Liljander, Anne; Meens, Jochen; Hegerman, Jan; Gourlé, Hadrien; Bishop, Richard P.; Roebbelen, Ina; Younan, Mario; Mustafa, Mudassir Imran; Mushtaq, Mamoona; Bongcam-Rudloff, Erik; Jores, Joerg. 2015. Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel. Standards in Genomic Sciences 10: |
| spellingShingle | staphylococcus Zubair, Saima Fischer, Anne Liljander, Anne M. Meens, Jochen Hegerman, Jan Gourlé, Hadrien Bishop, Richard P. Roebbelen, Ina Younan, Mario Mustafa, Mudassir Imran Mushtaq, Mamoona Bongcam-Rudloff, Erik Jores, Joerg Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel |
| title | Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel |
| title_full | Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel |
| title_fullStr | Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel |
| title_full_unstemmed | Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel |
| title_short | Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel |
| title_sort | complete genome sequence of staphylococcus aureus strain ilri eymole1 1 isolated from a kenyan dromedary camel |
| topic | staphylococcus |
| url | https://hdl.handle.net/10568/129569 |
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