Genetic Diversity of Cryptosporidium in Children in an Urban Informal Settlement of Nairobi, Kenya
Globally Cryptosporidium and Giardia species are the most common non-bacterial causes of diarrhoea in children and HIV infected individuals, yet data on their role in paediatric diarrhoea in Kenya remains scant. This study investigated the occurrence of Cryptosporidium species, genotypes and subtype...
| Main Authors: | , , , , , |
|---|---|
| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Public Library of Science
2015
|
| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/129295 |
| _version_ | 1855520438101213184 |
|---|---|
| author | Mbae, Cecilia Mulinge, Erastus Waruru, Anthony Ngugi, Benjamin Wainaina, James Kariuki, Samuel |
| author_browse | Kariuki, Samuel Mbae, Cecilia Mulinge, Erastus Ngugi, Benjamin Wainaina, James Waruru, Anthony |
| author_facet | Mbae, Cecilia Mulinge, Erastus Waruru, Anthony Ngugi, Benjamin Wainaina, James Kariuki, Samuel |
| author_sort | Mbae, Cecilia |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Globally Cryptosporidium and Giardia species are the most common non-bacterial causes of diarrhoea in children and HIV infected individuals, yet data on their role in paediatric diarrhoea in Kenya remains scant. This study investigated the occurrence of Cryptosporidium species, genotypes and subtypes in children, both hospitalized and living in an informal settlement in Nairobi.
This was a prospective cross-sectional study in which faecal specimen positive for Cryptosporidium spp. by microscopy from HIV infected and uninfected children aged five years and below presenting with diarrhoea at selected outpatient clinics in Mukuru informal settlements, or admitted to the paediatric ward at the Mbagathi District Hospital were characterized. The analysis was done by Polymerase Chain Reaction-Restriction Fragment Length Polymorphism (PCR-RFLP) of the 18srRNA gene for species identification and PCR-sequencing of the 60 kDa glycoprotein (GP60) gene for subtyping.
C. hominis was the most common species of Cryptosporidium identified in125/151(82.8%) of the children. Other species identified were C. parvum 18/151(11.9%), while C. felis and C. meleagridis were identified in 4 and 2 children, respectively. Wide genetic variation was observed within C. hominis, with identification of 5 subtype families; Ia, Ib, Id, Ie and If and 21 subtypes. Only subtype family IIc was identified within C. parvum. There was no association between species and HIV status or patient type.
C. hominis is the most common species associated with diarrhoea in the study population. There was high genetic variability in the C. hominis isolates with 22 different subtypes identified, whereas genetic diversity was low within C. parvum with only one subtype family IIc identified. |
| format | Journal Article |
| id | CGSpace129295 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2015 |
| publishDateRange | 2015 |
| publishDateSort | 2015 |
| publisher | Public Library of Science |
| publisherStr | Public Library of Science |
| record_format | dspace |
| spelling | CGSpace1292952025-12-08T10:11:39Z Genetic Diversity of Cryptosporidium in Children in an Urban Informal Settlement of Nairobi, Kenya Mbae, Cecilia Mulinge, Erastus Waruru, Anthony Ngugi, Benjamin Wainaina, James Kariuki, Samuel children kenya cryptosporidium Globally Cryptosporidium and Giardia species are the most common non-bacterial causes of diarrhoea in children and HIV infected individuals, yet data on their role in paediatric diarrhoea in Kenya remains scant. This study investigated the occurrence of Cryptosporidium species, genotypes and subtypes in children, both hospitalized and living in an informal settlement in Nairobi. This was a prospective cross-sectional study in which faecal specimen positive for Cryptosporidium spp. by microscopy from HIV infected and uninfected children aged five years and below presenting with diarrhoea at selected outpatient clinics in Mukuru informal settlements, or admitted to the paediatric ward at the Mbagathi District Hospital were characterized. The analysis was done by Polymerase Chain Reaction-Restriction Fragment Length Polymorphism (PCR-RFLP) of the 18srRNA gene for species identification and PCR-sequencing of the 60 kDa glycoprotein (GP60) gene for subtyping. C. hominis was the most common species of Cryptosporidium identified in125/151(82.8%) of the children. Other species identified were C. parvum 18/151(11.9%), while C. felis and C. meleagridis were identified in 4 and 2 children, respectively. Wide genetic variation was observed within C. hominis, with identification of 5 subtype families; Ia, Ib, Id, Ie and If and 21 subtypes. Only subtype family IIc was identified within C. parvum. There was no association between species and HIV status or patient type. C. hominis is the most common species associated with diarrhoea in the study population. There was high genetic variability in the C. hominis isolates with 22 different subtypes identified, whereas genetic diversity was low within C. parvum with only one subtype family IIc identified. 2015-12-21 2023-03-10T14:33:01Z 2023-03-10T14:33:01Z Journal Article https://hdl.handle.net/10568/129295 en Open Access Public Library of Science Mbae, Cecilia; Mulinge, Erastus; Waruru, Anthony; Ngugi, Benjamin; Wainaina, James; Kariuki, Samuel. 2015. Genetic Diversity of Cryptosporidium in Children in an Urban Informal Settlement of Nairobi, Kenya. PLOS ONE 10: e0142055 |
| spellingShingle | children kenya cryptosporidium Mbae, Cecilia Mulinge, Erastus Waruru, Anthony Ngugi, Benjamin Wainaina, James Kariuki, Samuel Genetic Diversity of Cryptosporidium in Children in an Urban Informal Settlement of Nairobi, Kenya |
| title | Genetic Diversity of Cryptosporidium in Children in an Urban Informal Settlement of Nairobi, Kenya |
| title_full | Genetic Diversity of Cryptosporidium in Children in an Urban Informal Settlement of Nairobi, Kenya |
| title_fullStr | Genetic Diversity of Cryptosporidium in Children in an Urban Informal Settlement of Nairobi, Kenya |
| title_full_unstemmed | Genetic Diversity of Cryptosporidium in Children in an Urban Informal Settlement of Nairobi, Kenya |
| title_short | Genetic Diversity of Cryptosporidium in Children in an Urban Informal Settlement of Nairobi, Kenya |
| title_sort | genetic diversity of cryptosporidium in children in an urban informal settlement of nairobi kenya |
| topic | children kenya cryptosporidium |
| url | https://hdl.handle.net/10568/129295 |
| work_keys_str_mv | AT mbaececilia geneticdiversityofcryptosporidiuminchildreninanurbaninformalsettlementofnairobikenya AT mulingeerastus geneticdiversityofcryptosporidiuminchildreninanurbaninformalsettlementofnairobikenya AT waruruanthony geneticdiversityofcryptosporidiuminchildreninanurbaninformalsettlementofnairobikenya AT ngugibenjamin geneticdiversityofcryptosporidiuminchildreninanurbaninformalsettlementofnairobikenya AT wainainajames geneticdiversityofcryptosporidiuminchildreninanurbaninformalsettlementofnairobikenya AT kariukisamuel geneticdiversityofcryptosporidiuminchildreninanurbaninformalsettlementofnairobikenya |