Cassava root crown phenotyping using three-dimension (3D) multi-view stereo reconstruction
Phenotypic analysis of cassava root crowns (CRCs) so far has been limited to visual inspection and very few measurements due to its laborious process in the feld. Here, we developed a platform for acquiring 3D CRC models using close-range photogrammetry for phenotypic analysis. The state of the...
| Main Authors: | , , , , , , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
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Springer
2022
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/128706 |
| _version_ | 1855513149002743808 |
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| author | Sunvittayakul, Pongsakorn Kittipadakul, Piya Wonnapinij, Passorn Chanchay, Pornchanan Wannitikul, Pitchapor Sathitnaitham, Sukhita Phanthanong, Phongnapha Changwitchukarn, Kanokphu Suttangkakul, Anongpat Ceballos, Hernan Vuttipongchaikij, Supachai |
| author_browse | Ceballos, Hernan Chanchay, Pornchanan Changwitchukarn, Kanokphu Kittipadakul, Piya Phanthanong, Phongnapha Sathitnaitham, Sukhita Sunvittayakul, Pongsakorn Suttangkakul, Anongpat Vuttipongchaikij, Supachai Wannitikul, Pitchapor Wonnapinij, Passorn |
| author_facet | Sunvittayakul, Pongsakorn Kittipadakul, Piya Wonnapinij, Passorn Chanchay, Pornchanan Wannitikul, Pitchapor Sathitnaitham, Sukhita Phanthanong, Phongnapha Changwitchukarn, Kanokphu Suttangkakul, Anongpat Ceballos, Hernan Vuttipongchaikij, Supachai |
| author_sort | Sunvittayakul, Pongsakorn |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Phenotypic analysis of cassava root crowns (CRCs) so far has been limited to visual inspection and
very few measurements due to its laborious process in the feld. Here, we developed a platform for
acquiring 3D CRC models using close-range photogrammetry for phenotypic analysis. The state of the
art is a low cost and easy to set up 3D acquisition requiring only a background sheet, a reference object
and a camera, compatible with feld experiments in remote areas. We tested diferent software with
CRC samples, and Agisoft and Blender were the most suitable software for generating high-quality 3D
models and data analysis, respectively. We optimized the workfow by testing diferent numbers of
images for 3D reconstruction and found that a minimum of 25 images per CRC can provide high quality
3D models. Up to ten traits, including 3D crown volumes, 3D crown surface, root density, surface to-volume ratio, root numbers, root angle, crown diameter, cylinder soil volume, CRC compactness and root length can be extracted providing novel parameters for studying cassava storage roots. We applied this platform to partial-inbred cassava populations and demonstrated that our platform provides reliable 3D CRC modelling for phenotypic analysis, analysis of genetic variances and supporting breeding selection. |
| format | Journal Article |
| id | CGSpace128706 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace1287062025-11-11T17:38:45Z Cassava root crown phenotyping using three-dimension (3D) multi-view stereo reconstruction Sunvittayakul, Pongsakorn Kittipadakul, Piya Wonnapinij, Passorn Chanchay, Pornchanan Wannitikul, Pitchapor Sathitnaitham, Sukhita Phanthanong, Phongnapha Changwitchukarn, Kanokphu Suttangkakul, Anongpat Ceballos, Hernan Vuttipongchaikij, Supachai plant sciences biological analysis models ciencia vegetal análisis biológico modelos Phenotypic analysis of cassava root crowns (CRCs) so far has been limited to visual inspection and very few measurements due to its laborious process in the feld. Here, we developed a platform for acquiring 3D CRC models using close-range photogrammetry for phenotypic analysis. The state of the art is a low cost and easy to set up 3D acquisition requiring only a background sheet, a reference object and a camera, compatible with feld experiments in remote areas. We tested diferent software with CRC samples, and Agisoft and Blender were the most suitable software for generating high-quality 3D models and data analysis, respectively. We optimized the workfow by testing diferent numbers of images for 3D reconstruction and found that a minimum of 25 images per CRC can provide high quality 3D models. Up to ten traits, including 3D crown volumes, 3D crown surface, root density, surface to-volume ratio, root numbers, root angle, crown diameter, cylinder soil volume, CRC compactness and root length can be extracted providing novel parameters for studying cassava storage roots. We applied this platform to partial-inbred cassava populations and demonstrated that our platform provides reliable 3D CRC modelling for phenotypic analysis, analysis of genetic variances and supporting breeding selection. 2022-06-15 2023-02-14T13:21:56Z 2023-02-14T13:21:56Z Journal Article https://hdl.handle.net/10568/128706 en Open Access application/pdf Springer Sunvittayakul, P.; Kittipadakul, P.; Wonnapinij, P.; Chanchay, P.; Wannitikul, P.; Sathitnaitham, S.; Phanthanong, P.; Changwitchukarn, K.; Suttangkakul, A.; Ceballos, H.; Vuttipongchaikij, S. (2022) Cassava root crown phenotyping using three-dimension (3D) multi-view stereo reconstruction. Scientific Reports 12: 10030. 14 p. ISSN: 2045-2322 |
| spellingShingle | plant sciences biological analysis models ciencia vegetal análisis biológico modelos Sunvittayakul, Pongsakorn Kittipadakul, Piya Wonnapinij, Passorn Chanchay, Pornchanan Wannitikul, Pitchapor Sathitnaitham, Sukhita Phanthanong, Phongnapha Changwitchukarn, Kanokphu Suttangkakul, Anongpat Ceballos, Hernan Vuttipongchaikij, Supachai Cassava root crown phenotyping using three-dimension (3D) multi-view stereo reconstruction |
| title | Cassava root crown phenotyping using three-dimension (3D) multi-view stereo reconstruction |
| title_full | Cassava root crown phenotyping using three-dimension (3D) multi-view stereo reconstruction |
| title_fullStr | Cassava root crown phenotyping using three-dimension (3D) multi-view stereo reconstruction |
| title_full_unstemmed | Cassava root crown phenotyping using three-dimension (3D) multi-view stereo reconstruction |
| title_short | Cassava root crown phenotyping using three-dimension (3D) multi-view stereo reconstruction |
| title_sort | cassava root crown phenotyping using three dimension 3d multi view stereo reconstruction |
| topic | plant sciences biological analysis models ciencia vegetal análisis biológico modelos |
| url | https://hdl.handle.net/10568/128706 |
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