The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization
The OMICAS alliance is part of the Colombian government’s Scientific Ecosystem, established between 2017-2018 to promote world-class research, technological advancement and improved competency of higher education across the nation. Since the program’s kick-off, OMICAS has focused on consolidating an...
| Autores principales: | , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Frontiers Media
2022
|
| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/127303 |
| _version_ | 1855517191285243904 |
|---|---|
| author | Jaramillo Botero, Andres Colorado, Julian D. Quimbaya, Mauricio Rebolledo, María Camila Lorieux, Mathias Ghneim-Herrera, Thaura Arango, Carlos A. Tobón, Luis E. Finke, Jorge Rocha, Camilo Muñoz, Fernando Riascos, John J. Silva, Fernando Chirinda, Ngonidzashe Caccamo, Mario Jose Vandepoele, Klaas Goddard, William A. |
| author_browse | Arango, Carlos A. Caccamo, Mario Jose Chirinda, Ngonidzashe Colorado, Julian D. Finke, Jorge Ghneim-Herrera, Thaura Goddard, William A. Jaramillo Botero, Andres Lorieux, Mathias Muñoz, Fernando Quimbaya, Mauricio Rebolledo, María Camila Riascos, John J. Rocha, Camilo Silva, Fernando Tobón, Luis E. Vandepoele, Klaas |
| author_facet | Jaramillo Botero, Andres Colorado, Julian D. Quimbaya, Mauricio Rebolledo, María Camila Lorieux, Mathias Ghneim-Herrera, Thaura Arango, Carlos A. Tobón, Luis E. Finke, Jorge Rocha, Camilo Muñoz, Fernando Riascos, John J. Silva, Fernando Chirinda, Ngonidzashe Caccamo, Mario Jose Vandepoele, Klaas Goddard, William A. |
| author_sort | Jaramillo Botero, Andres |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | The OMICAS alliance is part of the Colombian government’s Scientific Ecosystem, established between 2017-2018 to promote world-class research, technological advancement and improved competency of higher education across the nation. Since the program’s kick-off, OMICAS has focused on consolidating and validating a multi-scale, multi-institutional, multi-disciplinary strategy and infrastructure to advance discoveries in plant science and the development of new technological solutions for improving agricultural productivity and sustainability. The strategy and methods described in this article, involve the characterization of different crop models, using high-throughput, real-time phenotyping technologies as well as experimental tissue characterization at different levels of the omics hierarchy and under contrasting conditions, to elucidate epigenome-, genome-, proteome- and metabolome-phenome relationships. The massive data sets are used to derive in-silico models, methods and tools to discover complex underlying structure-function associations, which are then carried over to the production of new germplasm with improved agricultural traits. Here, we describe OMICAS’ R&D trans-disciplinary multi-project architecture, explain the overall strategy and methods for crop-breeding, recent progress and results, and the overarching challenges that lay ahead in the field. |
| format | Journal Article |
| id | CGSpace127303 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Frontiers Media |
| publisherStr | Frontiers Media |
| record_format | dspace |
| spelling | CGSpace1273032025-12-08T10:29:22Z The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization Jaramillo Botero, Andres Colorado, Julian D. Quimbaya, Mauricio Rebolledo, María Camila Lorieux, Mathias Ghneim-Herrera, Thaura Arango, Carlos A. Tobón, Luis E. Finke, Jorge Rocha, Camilo Muñoz, Fernando Riascos, John J. Silva, Fernando Chirinda, Ngonidzashe Caccamo, Mario Jose Vandepoele, Klaas Goddard, William A. crops plant breeding nanotechnology rice sugar cane optimization methods The OMICAS alliance is part of the Colombian government’s Scientific Ecosystem, established between 2017-2018 to promote world-class research, technological advancement and improved competency of higher education across the nation. Since the program’s kick-off, OMICAS has focused on consolidating and validating a multi-scale, multi-institutional, multi-disciplinary strategy and infrastructure to advance discoveries in plant science and the development of new technological solutions for improving agricultural productivity and sustainability. The strategy and methods described in this article, involve the characterization of different crop models, using high-throughput, real-time phenotyping technologies as well as experimental tissue characterization at different levels of the omics hierarchy and under contrasting conditions, to elucidate epigenome-, genome-, proteome- and metabolome-phenome relationships. The massive data sets are used to derive in-silico models, methods and tools to discover complex underlying structure-function associations, which are then carried over to the production of new germplasm with improved agricultural traits. Here, we describe OMICAS’ R&D trans-disciplinary multi-project architecture, explain the overall strategy and methods for crop-breeding, recent progress and results, and the overarching challenges that lay ahead in the field. 2022-10 2023-01-17T14:54:15Z 2023-01-17T14:54:15Z Journal Article https://hdl.handle.net/10568/127303 en https://hdl.handle.net/10568/127313 Open Access application/pdf application/pdf Frontiers Media Jaramillo-Botero, A.; Colorado, J.; Quimbaya, M.; Rebolledo, M.C.; Lorieux, M.; Ghneim-Herrera, T.; Arango C.A.; Tobón, L.E.; Finke, J.; Rocha, C.; Muñoz, F.; Riascos, J.J.; Silva, F.; Chirinda, N.; Caccamo, M.; Vandepoele, K.; Goddard, W.A. III (2022) The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization. Frontiers in Plant Science 13:992663. ISSN: 1664-462X |
| spellingShingle | crops plant breeding nanotechnology rice sugar cane optimization methods Jaramillo Botero, Andres Colorado, Julian D. Quimbaya, Mauricio Rebolledo, María Camila Lorieux, Mathias Ghneim-Herrera, Thaura Arango, Carlos A. Tobón, Luis E. Finke, Jorge Rocha, Camilo Muñoz, Fernando Riascos, John J. Silva, Fernando Chirinda, Ngonidzashe Caccamo, Mario Jose Vandepoele, Klaas Goddard, William A. The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization |
| title | The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization |
| title_full | The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization |
| title_fullStr | The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization |
| title_full_unstemmed | The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization |
| title_short | The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization |
| title_sort | omicas alliance an international research program on multi omics for crop breeding optimization |
| topic | crops plant breeding nanotechnology rice sugar cane optimization methods |
| url | https://hdl.handle.net/10568/127303 |
| work_keys_str_mv | AT jaramilloboteroandres theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT coloradojuliand theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT quimbayamauricio theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT rebolledomariacamila theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT lorieuxmathias theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT ghneimherrerathaura theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT arangocarlosa theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT tobonluise theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT finkejorge theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT rochacamilo theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT munozfernando theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT riascosjohnj theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT silvafernando theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT chirindangonidzashe theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT caccamomariojose theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT vandepoeleklaas theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT goddardwilliama theomicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT jaramilloboteroandres omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT coloradojuliand omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT quimbayamauricio omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT rebolledomariacamila omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT lorieuxmathias omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT ghneimherrerathaura omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT arangocarlosa omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT tobonluise omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT finkejorge omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT rochacamilo omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT munozfernando omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT riascosjohnj omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT silvafernando omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT chirindangonidzashe omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT caccamomariojose omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT vandepoeleklaas omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization AT goddardwilliama omicasallianceaninternationalresearchprogramonmultiomicsforcropbreedingoptimization |