The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

Investment in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing in Africa over the past year has led to a major increase in the number of sequences that have been generated and used to track the pandemic on the continent, a number that now exceeds 100,000 genomes. Our results s...

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Main Authors: Tegally, H., San, J.E., Cotten, M., Moir, M., Tegomoh, B., Mboowa, G., Martin, D.P., Baxter, C., Lambisia, A.W., Diallo, A., Amoako, D.G., Diagne, M.M., Sisay, A., Zekri, AN., Gueye, A.S., Sangare, A.K., Ouedraogo, A.S., Sow, A., Musa, A.O., Sesay, A.K., Abias, A.G., Elzagheid, A.I., Lagare, A., Kemi, A.S., Abar, A.E., Johnson, A.A., Fowotade, A., Oluwapelumi, A.O., Amuri, A.A., Juru, A., Kandeil, A., Mostafa, A., Rebai, A., Sayed, A., Kazeem, A., Balde, A., Christoffels, A., Trotter, A.J., Campbell, A., Keita, A.K., Koné, A., Bouzid, A., Souissi, A., Agweyu, A., Naguib, A., Gutierrez, A.V., Nkeshimana, A., Page, A.J., Yadouleton, A., Vinze, A., Happi, A.N., Chouikha, A., Iranzadeh, A., Maharaj, A., Batchi-Bouyou, A.L., Ismail, A., Sylverken, A.A., Goba, A., Femi, A., Sijuwola, A.E., Marycelin, B., Salako, B.L., Oderinde, B.S., Bolajoko, B., Diarra, B., Herring, B.L., Tsofa, B., Lekana-Douki, B., Mvula, B., Njanpop-Lafourcade, B.M., Marondera, B.T., Khaireh, B.A., Kouriba, B., Adu, B., Pool, B., McInnis, B., Brook, C., Williamson, C., Nduwimana, C., Anscombe, C., Pratt, C.B., Scheepers, C., Akoua-Koffi, C.G., Agoti, C.N., Mapanguy, C.M., Loucoubar, C., Onwuamah, CK., Ihekweazu, C., Malaka, C.N., Peyrefitte, C., Grace, C., Omoruyi, C.E., Rafaï, C.D., Morang'a, C.M., Erameh, C., Lule, D.B., Bridges, D.J., Mukadi-Bamuleka, D., Park, D., Rasmussen, D.A., Baker, D., Nokes, D.J., Ssemwanga, D., Tshiabuila, D., Amuzu, D.S.Y., Goedhals, D., Grant, D.S., Omuoyo, D.O., Maruapula, D., Wanjohi, D.W., Foster-Nyarko, E., Lusamaki, E.K., Simulundu, E., Ong'era, E.M., Ngabana, E.N., Okoth, Edward A., Otieno, E., Shumba, E., Barasa, E., Ahmed, E.B., Ahmed, E.A., Lokilo, E., Mukantwari, E., Philomena, E., Belarbi, E., Simon-Loriere, E., Anoh, EA., Manuel, E., Leendertz, F., Taweh, F.M., Wasfi, F., Abdelmoula, F., Takawira, F.T., Derrar, F., Ajogbasile, F.V., Treurnicht, F., Onikepe, F., Ntoumi, F., Muyembe, F.M., Ragomzingba, F.E.Z., Dratibi, F.A., Iyanu, F.A., Mbunsu, G.K., Thilliez, G., Kay, G.L., Akpede, G.O., Zyl, G.U. van, Awandare, G.A., Kpeli, G.S., Schubert, G., Maphalala, G.P., Ranaivoson, H.C., Omunakwe, H.E., Onywera, H., Abe, H., Karray, H., Nansumba, H., Triki, H., Kadjo, H.A.A., Elgahzaly, H., Gumbo, H., Mathieu, H., Kavunga-Membo, H., Smeti, I., Olawoye, I.B., Adetifa, I.M.O., Odia, I., Ben, Boubaker, I.B., Mohammad, I.A., Ssewanyana, I., Wurie, I., Konstantinus, I.S., Halatoko, J.W.A., Ayei, J., Sonoo, J., Makangara, J.C., Tamfum, J.M., Heraud, J.M., Shaffer, J.G., Giandhari, J., Musyoki, J., Nkurunziza, J., Uwanibe, J.N., Bhiman, J.N., Yasuda, J., Morais, J., Kiconco, J., Sandi, J.D., Huddleston, J., Odoom, J.K., Morobe, J.M., Gyapong, J.O., Kayiwa, J.T., Okolie, J.C., Xavier, J.S., Gyamfi, J., Wamala, J.F., Bonney, J.H.K., Nyandwi, J., Everatt, J., Nakaseegu, J., Ngoi, J.M., Namulondo, J., Oguzie, J.U., Andeko, JC., Lutwama, J.J., Mogga, J.J.H., O'Grady, J., Siddle, KJ., Victoir, K., Adeyemi, K.T., Tumedi, K.A., Carvalho, KS., Mohammed, K.S., Dellagi, K., Musonda, K.G., Duedu, K.O., Fki-Berrajah, L., Singh, L., Kepler, L.M., Biscornet, L., Oliveira, Martins, L. de, Chabuka, L., Olubayo, L., Ojok, L.D., Deng, L.L., Ochola-Oyier, L.I., Tyers, L., Mine, M., Ramuth, M., Mastouri, M., ElHefnawi, M., Mbanne, M., Matsheka, M.I., Kebabonye, M., Diop, M., Momoh, M., Lima, Mendonça, M.D.L., Venter, M., Paye, M.F., Faye, M., Nyaga, M.M., Mareka, M., Damaris, M.M., Mburu, M.W., Mpina, M.G., Owusu, M., Wiley, M.R., Tatfeng, M.Y., Ayekaba, M.O., Abouelhoda, M., Beloufa, M.A., Seadawy, M.G., Khalifa, M.K., Matobo, M.M., Kane, M., Salou, M., Mbulawa, M.B., Mwenda, M., Allam, M., Phan, M.V.T., Abid, N., Rujeni, N., Abuzaid, N., Ismael, N., Elguindy, N., Top, N.M., Dia, N., Mabunda, N., Hsiao, N.Y., Silochi, N.B., Francisco, N.M., Saasa, N., Bbosa, N., Murunga, N., Gumede, N., Wolter, N., Sitharam, N., Ndodo, N., Ajayi, N.A., Tordo, N., Mbhele, N., Razanajatovo, N.H., Iguosadolo, N., Mba, N., Kingsley, O.C., Sylvanus, O., Femi, O., Adewumi, O.M., Testimony, O., Ogunsanya, O.A., Fakayode, O., Ogah, O.E., Oludayo, O.E., Faye, O., Smith-Lawrence, P., Ondoa, P., Combe, P., Nabisubi, P., Semanda, P., Oluniyi, P.E., Arnaldo, P., Quashie, P.K., Okokhere, P.O., Bejon, P., Dussart, P., Bester, P.A., Mbala, P.K., Kaleebu, P., Abechi, P., El-Shesheny, R., Joseph, R., Aziz, R.K., Essomba, R.G., Ayivor-Djanie, R., Njouom, R., Phillips, R.O., Gorman, R., Kingsley, R.A., Neto Rodrigues, R.M.D.E.S.A., Audu, R.A., Carr, R.A.A., Gargouri, S., Masmoudi, S., Bootsma, S., Sankhe, S., Mohamed, S.I., Femi, S., Mhalla, S., Hosch, S., Kassim, S.K., Metha, S., Trabelsi, S., Agwa, S.H., Mwangi, S.W., Doumbia, S., Makiala-Mandanda, S., Aryeetey, S., Ahmed, S.S., Ahmed, S.M., Elhamoumi, S., Moyo, S., Lutucuta, S., Gaseitsiwe, S., Jalloh, S., Andriamandimby, S.F., Oguntope, S., Grayo, S., Lekana-Douki, S., Prosolek, S., Ouangraoua, S., Wyk, S. van, Schaffner, S.F., Kanyerezi, S., Ahuka-Mundeke, S., Rudder, S., Pillay, S., Nabadda, S., Behillil, S., Budiaki, S.L., Werf, S. van der, Mashe, T., Mohale, T., Le-Viet, T., Velavan, T.P., Schindler, T., Maponga, T.G., Bedford, T., Anyaneji, U.J., Chinedu, U., Ramphal, U., George, U.E., Enouf, V., Nene, Vishvanath M., Gorova, V., Roshdy, W.H., Karim, W.A., Ampofo, W.K., Preiser, W., Choga, W.T., Ahmed, Y.A., Ramphal, Y., Bediako, Y., Naidoo, Y., Butera, Y., Laurent, Z.R. de, Africa Pathogen Genomics Initiative, Ouma, A.E.O., Gottberg, A. von, Githinji, G., Moeti, M., Tomori, O., Sabeti, P.C., Sall, A.A., Oyola, Samuel O., Tebeje, Y.K., Tessema, S.K., Oliveira, T. de, Happi, C., Lessells, R., Nkengasong, J., Wilkinson, E.
Format: Journal Article
Language:Inglés
Published: American Association for the Advancement of Science 2022
Subjects:
Online Access:https://hdl.handle.net/10568/125335

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