Rice Galaxy: an open resource for plant science published
Rice Galaxy (http://galaxy.irri.org) is a publicly available website for bioinformatic analyses using 3000 rice genomes sequenced from IRRI's rice genbank (3KRG project, https://gigascience.biomedcentral.com/articles/10.1186/2047-217X-3-7), Antenna Panel (rice genotypes that act as sensors for envir...
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| Format: | Case Study |
| Language: | Inglés |
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2019
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| Online Access: | https://hdl.handle.net/10568/121728 |
| _version_ | 1855539810317369344 |
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| author | CGIAR Research Program on Rice |
| author_browse | CGIAR Research Program on Rice |
| author_facet | CGIAR Research Program on Rice |
| author_sort | CGIAR Research Program on Rice |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Rice Galaxy (http://galaxy.irri.org) is a publicly available website for bioinformatic analyses using 3000 rice genomes sequenced from IRRI's rice genbank (3KRG project, https://gigascience.biomedcentral.com/articles/10.1186/2047-217X-3-7), Antenna Panel (rice genotypes that act as sensors for environmental changes, https://agritrop.cirad.fr/590501/) and other specialized datasets. Tools are available from the galaxy tool shed (http://galaxy toolshed.excellenceinbreeding.org) including for designing single-nucleotide polymorphism assays, analyzing genome-wide association studies, population diversity, rice−bacterial pathogen diagnostics, and a suite of published genomic prediction methods. |
| format | Case Study |
| id | CGSpace121728 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2019 |
| publishDateRange | 2019 |
| publishDateSort | 2019 |
| record_format | dspace |
| spelling | CGSpace1217282023-03-14T13:42:21Z Rice Galaxy: an open resource for plant science published CGIAR Research Program on Rice rice genotypes methods genomes polymorphism population tools pathogens sciences plants sensors nucleotides prediction association case studies agrifood systems rural development Rice Galaxy (http://galaxy.irri.org) is a publicly available website for bioinformatic analyses using 3000 rice genomes sequenced from IRRI's rice genbank (3KRG project, https://gigascience.biomedcentral.com/articles/10.1186/2047-217X-3-7), Antenna Panel (rice genotypes that act as sensors for environmental changes, https://agritrop.cirad.fr/590501/) and other specialized datasets. Tools are available from the galaxy tool shed (http://galaxy toolshed.excellenceinbreeding.org) including for designing single-nucleotide polymorphism assays, analyzing genome-wide association studies, population diversity, rice−bacterial pathogen diagnostics, and a suite of published genomic prediction methods. 2019-12-31 2022-09-12T12:03:33Z 2022-09-12T12:03:33Z Case Study https://hdl.handle.net/10568/121728 en Open Access application/pdf CGIAR Research Program on Rice. 2019. Rice Galaxy: an open resource for plant science published. Reported in Rice Annual Report 2019. Outcome Impact Case Report. |
| spellingShingle | rice genotypes methods genomes polymorphism population tools pathogens sciences plants sensors nucleotides prediction association case studies agrifood systems rural development CGIAR Research Program on Rice Rice Galaxy: an open resource for plant science published |
| title | Rice Galaxy: an open resource for plant science published |
| title_full | Rice Galaxy: an open resource for plant science published |
| title_fullStr | Rice Galaxy: an open resource for plant science published |
| title_full_unstemmed | Rice Galaxy: an open resource for plant science published |
| title_short | Rice Galaxy: an open resource for plant science published |
| title_sort | rice galaxy an open resource for plant science published |
| topic | rice genotypes methods genomes polymorphism population tools pathogens sciences plants sensors nucleotides prediction association case studies agrifood systems rural development |
| url | https://hdl.handle.net/10568/121728 |
| work_keys_str_mv | AT cgiarresearchprogramonrice ricegalaxyanopenresourceforplantsciencepublished |