Complete genome sequence of a novel secovirid infecting cassava in the Americas
We report the complete genome sequence of a field isolate of a novel bipartite secovirid infecting cassava in Colombia, provisionally named "cassava torrado-like virus" (CsTLV). The genome sequence was obtained using Oxford Nanopore Technology, and the 5’ ends were confirmed by RACE. The RNA1 is 725...
| Autores principales: | , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Springer
2022
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/120939 |
| _version_ | 1855533438634819584 |
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| author | Leiva Sandoval, Ana Maria Jiménez Polo, Jenyfer Sandoval, Hector Pérez, Shirley Cuéllar, Wilmer Jose |
| author_browse | Cuéllar, Wilmer Jose Jiménez Polo, Jenyfer Leiva Sandoval, Ana Maria Pérez, Shirley Sandoval, Hector |
| author_facet | Leiva Sandoval, Ana Maria Jiménez Polo, Jenyfer Sandoval, Hector Pérez, Shirley Cuéllar, Wilmer Jose |
| author_sort | Leiva Sandoval, Ana Maria |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | We report the complete genome sequence of a field isolate of a novel bipartite secovirid infecting cassava in Colombia, provisionally named "cassava torrado-like virus" (CsTLV). The genome sequence was obtained using Oxford Nanopore Technology, and the 5’ ends were confirmed by RACE. The RNA1 is 7252 nucleotides (nt) long, encoding a polyprotein of 2336 amino acids (aa) containing the typical “replication block”, conserved torradovirus motifs, and a Maf/Ham1 domain, which is not commonly found in viral genomes. The RNA2 is 4469 nt long and contains two overlapping ORFs encoding proteins of 226 and 1179 aa, showing the characteristic genome arrangement of members of the genus Torradovirus. |
| format | Journal Article |
| id | CGSpace120939 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace1209392025-11-11T19:00:36Z Complete genome sequence of a novel secovirid infecting cassava in the Americas Leiva Sandoval, Ana Maria Jiménez Polo, Jenyfer Sandoval, Hector Pérez, Shirley Cuéllar, Wilmer Jose secoviridae genomes infectious diseases disease transmission genomas enfermedades infecciosas transmisión de enfermedades We report the complete genome sequence of a field isolate of a novel bipartite secovirid infecting cassava in Colombia, provisionally named "cassava torrado-like virus" (CsTLV). The genome sequence was obtained using Oxford Nanopore Technology, and the 5’ ends were confirmed by RACE. The RNA1 is 7252 nucleotides (nt) long, encoding a polyprotein of 2336 amino acids (aa) containing the typical “replication block”, conserved torradovirus motifs, and a Maf/Ham1 domain, which is not commonly found in viral genomes. The RNA2 is 4469 nt long and contains two overlapping ORFs encoding proteins of 226 and 1179 aa, showing the characteristic genome arrangement of members of the genus Torradovirus. 2022-02 2022-08-25T10:22:59Z 2022-08-25T10:22:59Z Journal Article https://hdl.handle.net/10568/120939 en Open Access application/pdf Springer Leiva, A.M.; Jimenez, J.; Sandoval, H.; Perez, S.; Cuellar, W.J. (2022) Complete genome sequence of a novel secovirid infecting cassava in the Americas. Archives of Virology 167 p. 665–668. ISSN: 0304-8608 |
| spellingShingle | secoviridae genomes infectious diseases disease transmission genomas enfermedades infecciosas transmisión de enfermedades Leiva Sandoval, Ana Maria Jiménez Polo, Jenyfer Sandoval, Hector Pérez, Shirley Cuéllar, Wilmer Jose Complete genome sequence of a novel secovirid infecting cassava in the Americas |
| title | Complete genome sequence of a novel secovirid infecting cassava in the Americas |
| title_full | Complete genome sequence of a novel secovirid infecting cassava in the Americas |
| title_fullStr | Complete genome sequence of a novel secovirid infecting cassava in the Americas |
| title_full_unstemmed | Complete genome sequence of a novel secovirid infecting cassava in the Americas |
| title_short | Complete genome sequence of a novel secovirid infecting cassava in the Americas |
| title_sort | complete genome sequence of a novel secovirid infecting cassava in the americas |
| topic | secoviridae genomes infectious diseases disease transmission genomas enfermedades infecciosas transmisión de enfermedades |
| url | https://hdl.handle.net/10568/120939 |
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