GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics
In silico chromosome painting is a technique by which contributions of distinct genetic groups are represented along chromosomes of hybrid individuals. This type of analysis is used to study the mechanisms by which these individuals were formed. Such techniques are well adapted to identify genetic g...
| Autores principales: | , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Oxford University Press
2022
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/120179 |
| _version_ | 1855543161207652352 |
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| author | Summo, Marilyne Comte, Aurore Martin, Guillaume Perelle, Pierrick Weitz, Eric M. Droc, Gaëtan Rouard, Mathieu |
| author_browse | Comte, Aurore Droc, Gaëtan Martin, Guillaume Perelle, Pierrick Rouard, Mathieu Summo, Marilyne Weitz, Eric M. |
| author_facet | Summo, Marilyne Comte, Aurore Martin, Guillaume Perelle, Pierrick Weitz, Eric M. Droc, Gaëtan Rouard, Mathieu |
| author_sort | Summo, Marilyne |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | In silico chromosome painting is a technique by which contributions of distinct genetic groups are represented along chromosomes of hybrid individuals. This type of analysis is used to study the mechanisms by which these individuals were formed. Such techniques are well adapted to identify genetic groups contributing to these individuals as well as hybridization events. It can also be used to follow chromosomal recombinations that occurred naturally or were generated by selective breeding. Here, we present GeMo, a novel interactive web-based and user-oriented interface to visualize in a linear-based fashion results of in silico chromosome painting. To facilitate data input generation, a script to execute analytical commands is provided and an interactive data curation mode is supported to ensure consistency of the automated procedure. GeMo contains preloaded datasets from published studies on crop domestication but can be applied to other purposes, such as breeding programs Although only applied so far on plants, GeMo can handle data from animals as well. |
| format | Journal Article |
| id | CGSpace120179 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace1201792025-11-05T12:47:02Z GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics Summo, Marilyne Comte, Aurore Martin, Guillaume Perelle, Pierrick Weitz, Eric M. Droc, Gaëtan Rouard, Mathieu digital technology chromosome mapping data collection cartografía cromosómica tecnología digital colección de datos In silico chromosome painting is a technique by which contributions of distinct genetic groups are represented along chromosomes of hybrid individuals. This type of analysis is used to study the mechanisms by which these individuals were formed. Such techniques are well adapted to identify genetic groups contributing to these individuals as well as hybridization events. It can also be used to follow chromosomal recombinations that occurred naturally or were generated by selective breeding. Here, we present GeMo, a novel interactive web-based and user-oriented interface to visualize in a linear-based fashion results of in silico chromosome painting. To facilitate data input generation, a script to execute analytical commands is provided and an interactive data curation mode is supported to ensure consistency of the automated procedure. GeMo contains preloaded datasets from published studies on crop domestication but can be applied to other purposes, such as breeding programs Although only applied so far on plants, GeMo can handle data from animals as well. 2022-07-14 2022-07-19T14:04:46Z 2022-07-19T14:04:46Z Journal Article https://hdl.handle.net/10568/120179 en Open Access application/pdf Oxford University Press Summo, M.; Comte, A.; Martin, G.; Perelle, P.; Weitz, E.M.; Droc, G.; Rouard, M. (2022) GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics. Database: Online First Paper (14 July 2022). 5 p. ISSN: 1758-0463 |
| spellingShingle | digital technology chromosome mapping data collection cartografía cromosómica tecnología digital colección de datos Summo, Marilyne Comte, Aurore Martin, Guillaume Perelle, Pierrick Weitz, Eric M. Droc, Gaëtan Rouard, Mathieu GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics |
| title | GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics |
| title_full | GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics |
| title_fullStr | GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics |
| title_full_unstemmed | GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics |
| title_short | GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics |
| title_sort | gemo a web based platform for the visualization and curation of genome ancestry mosaics |
| topic | digital technology chromosome mapping data collection cartografía cromosómica tecnología digital colección de datos |
| url | https://hdl.handle.net/10568/120179 |
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