Identification of QTLs controlling resistance to anthracnose disease in water yam (Dioscorea alata)
Anthracnose disease caused by a fungus Colletotrichum gloeosporioides is the primary cause of yield loss in water yam (Dioscorea alata), the widely cultivated species of yam. Resistance to yam anthracnose disease (YAD) is a prime target in breeding initiatives to develop durable-resistant cultivars...
| Autores principales: | , , , , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
MDPI
2022
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/118358 |
| _version_ | 1855538241301643264 |
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| author | Agre, A.P. Darkwa, K. Olasanmi, B. Kolade, O. Mournet, P. Bhattacharjee, Ranjana López Montes, A. Koeyer, D. de Adebola, P.O. Kumar, P. Lava Asiedu, R. Asfaw, A. |
| author_browse | Adebola, P.O. Agre, A.P. Asfaw, A. Asiedu, R. Bhattacharjee, Ranjana Darkwa, K. Koeyer, D. de Kolade, O. Kumar, P. Lava López Montes, A. Mournet, P. Olasanmi, B. |
| author_facet | Agre, A.P. Darkwa, K. Olasanmi, B. Kolade, O. Mournet, P. Bhattacharjee, Ranjana López Montes, A. Koeyer, D. de Adebola, P.O. Kumar, P. Lava Asiedu, R. Asfaw, A. |
| author_sort | Agre, A.P. |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Anthracnose disease caused by a fungus Colletotrichum gloeosporioides is the primary cause of yield loss in water yam (Dioscorea alata), the widely cultivated species of yam. Resistance to yam anthracnose disease (YAD) is a prime target in breeding initiatives to develop durable-resistant cultivars for sustainable management of the disease in water yam cultivation. This study aimed at tagging quantitative trait loci (QTL) for anthracnose disease resistance in a bi-parental mapping population of D. alata. Parent genotypes and their recombinant progenies were genotyped using the Genotyping by Sequencing (GBS) platform and phenotyped in two crop cycles for two years. A high-density genetic linkage map was built with 3184 polymorphic Single Nucleotide Polymorphism (NSP) markers well distributed across the genome, covering 1460.94 cM total length. On average, 163 SNP markers were mapped per chromosome with 0.58 genetic distances between SNPs. Four QTL regions related to yam anthracnose disease resistance were identified on three chromosomes. The proportion of phenotypic variance explained by these QTLs ranged from 29.54 to 39.40%. The QTL regions identified showed genes that code for known plant defense responses such as GDSL-like Lipase/Acylhydrolase, Protein kinase domain, and F-box protein. The results from the present study provide valuable insight into the genetic architecture of anthracnose resistance in water yam. The candidate markers identified herewith form a relevant resource to apply marker-assisted selection as an alternative to a conventional labor-intensive screening for anthracnose resistance in water yam. |
| format | Journal Article |
| id | CGSpace118358 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | MDPI |
| publisherStr | MDPI |
| record_format | dspace |
| spelling | CGSpace1183582025-12-08T10:29:22Z Identification of QTLs controlling resistance to anthracnose disease in water yam (Dioscorea alata) Agre, A.P. Darkwa, K. Olasanmi, B. Kolade, O. Mournet, P. Bhattacharjee, Ranjana López Montes, A. Koeyer, D. de Adebola, P.O. Kumar, P. Lava Asiedu, R. Asfaw, A. dioscorea yams genetic maps genotypes diseases quantitative trait loci analysis Anthracnose disease caused by a fungus Colletotrichum gloeosporioides is the primary cause of yield loss in water yam (Dioscorea alata), the widely cultivated species of yam. Resistance to yam anthracnose disease (YAD) is a prime target in breeding initiatives to develop durable-resistant cultivars for sustainable management of the disease in water yam cultivation. This study aimed at tagging quantitative trait loci (QTL) for anthracnose disease resistance in a bi-parental mapping population of D. alata. Parent genotypes and their recombinant progenies were genotyped using the Genotyping by Sequencing (GBS) platform and phenotyped in two crop cycles for two years. A high-density genetic linkage map was built with 3184 polymorphic Single Nucleotide Polymorphism (NSP) markers well distributed across the genome, covering 1460.94 cM total length. On average, 163 SNP markers were mapped per chromosome with 0.58 genetic distances between SNPs. Four QTL regions related to yam anthracnose disease resistance were identified on three chromosomes. The proportion of phenotypic variance explained by these QTLs ranged from 29.54 to 39.40%. The QTL regions identified showed genes that code for known plant defense responses such as GDSL-like Lipase/Acylhydrolase, Protein kinase domain, and F-box protein. The results from the present study provide valuable insight into the genetic architecture of anthracnose resistance in water yam. The candidate markers identified herewith form a relevant resource to apply marker-assisted selection as an alternative to a conventional labor-intensive screening for anthracnose resistance in water yam. 2022 2022-03-10T12:13:09Z 2022-03-10T12:13:09Z Journal Article https://hdl.handle.net/10568/118358 en Open Access application/pdf MDPI Agre, P.A., Darkwa, K., Olasanmi, B., Kolade, O., Mournet, P., Bhattacharjee, R., ... & Asfaw, A. (2022). Identification of QTLs controlling resistance to anthracnose disease in water yam (Dioscorea alata). Genes, 13(2), 1-16. |
| spellingShingle | dioscorea yams genetic maps genotypes diseases quantitative trait loci analysis Agre, A.P. Darkwa, K. Olasanmi, B. Kolade, O. Mournet, P. Bhattacharjee, Ranjana López Montes, A. Koeyer, D. de Adebola, P.O. Kumar, P. Lava Asiedu, R. Asfaw, A. Identification of QTLs controlling resistance to anthracnose disease in water yam (Dioscorea alata) |
| title | Identification of QTLs controlling resistance to anthracnose disease in water yam (Dioscorea alata) |
| title_full | Identification of QTLs controlling resistance to anthracnose disease in water yam (Dioscorea alata) |
| title_fullStr | Identification of QTLs controlling resistance to anthracnose disease in water yam (Dioscorea alata) |
| title_full_unstemmed | Identification of QTLs controlling resistance to anthracnose disease in water yam (Dioscorea alata) |
| title_short | Identification of QTLs controlling resistance to anthracnose disease in water yam (Dioscorea alata) |
| title_sort | identification of qtls controlling resistance to anthracnose disease in water yam dioscorea alata |
| topic | dioscorea yams genetic maps genotypes diseases quantitative trait loci analysis |
| url | https://hdl.handle.net/10568/118358 |
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