Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers
Knowledge of genetic diversity in plant germplasm and the relationship between genetic factors and phenotypic expression is vital for crop improvement. This study’s objectives were to understand the extent of genetic diversity and population structure in 60 common bean genotypes from East and Southe...
| Autores principales: | , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
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Public Library of Science
2021
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| Acceso en línea: | https://hdl.handle.net/10568/116758 |
| _version_ | 1855543649376403456 |
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| author | Nkhata, Wilson Shimelis, Hussein Melis, Rob Chirwa, Rowland Mzengeza, Tenyson Mathew, Isack Shayanowako, Admire |
| author_browse | Chirwa, Rowland Mathew, Isack Melis, Rob Mzengeza, Tenyson Nkhata, Wilson Shayanowako, Admire Shimelis, Hussein |
| author_facet | Nkhata, Wilson Shimelis, Hussein Melis, Rob Chirwa, Rowland Mzengeza, Tenyson Mathew, Isack Shayanowako, Admire |
| author_sort | Nkhata, Wilson |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Knowledge of genetic diversity in plant germplasm and the relationship between genetic factors and phenotypic expression is vital for crop improvement. This study’s objectives were to understand the extent of genetic diversity and population structure in 60 common bean genotypes from East and Southern Africa. The common bean genotypes exhibited significant (p<0.05) levels of variability for traits such as days to flowering (DTF), days to maturity (DTM), number of pods per plant (NPP), number of seeds per pod (NSP), and grain yield per hectare in kilograms (GYD). About 47.82 per cent of the variation among the genotypes was explained by seven principal components (PC) associated with the following agronomic traits: NPP, NFF (nodes to first flower), DTF, GH (growth habit) and GYD. The SNP markers revealed mean gene diversity and polymorphic information content values of 0.38 and 0.25, respectively, which suggested the presence of considerable genetic variation among the assessed genotypes. Analysis of molecular variance showed that 51% of the genetic variation were between the gene pools, while 49% of the variation were within the gene pools. The genotypes were delineated into two distinct groups through the population structure, cluster and phylogenetic analyses. Genetically divergent genotypes such as DRK57, MW3915, NUA59, and VTTT924/4-4 with high yield and agronomic potential were identified, which may be useful for common bean improvement. |
| format | Journal Article |
| id | CGSpace116758 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2021 |
| publishDateRange | 2021 |
| publishDateSort | 2021 |
| publisher | Public Library of Science |
| publisherStr | Public Library of Science |
| record_format | dspace |
| spelling | CGSpace1167582025-11-11T23:17:20Z Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers Nkhata, Wilson Shimelis, Hussein Melis, Rob Chirwa, Rowland Mzengeza, Tenyson Mathew, Isack Shayanowako, Admire population structure biodiversity germplasm collections plant morphology estructura de la población biodiversidad colecciones de material genético Knowledge of genetic diversity in plant germplasm and the relationship between genetic factors and phenotypic expression is vital for crop improvement. This study’s objectives were to understand the extent of genetic diversity and population structure in 60 common bean genotypes from East and Southern Africa. The common bean genotypes exhibited significant (p<0.05) levels of variability for traits such as days to flowering (DTF), days to maturity (DTM), number of pods per plant (NPP), number of seeds per pod (NSP), and grain yield per hectare in kilograms (GYD). About 47.82 per cent of the variation among the genotypes was explained by seven principal components (PC) associated with the following agronomic traits: NPP, NFF (nodes to first flower), DTF, GH (growth habit) and GYD. The SNP markers revealed mean gene diversity and polymorphic information content values of 0.38 and 0.25, respectively, which suggested the presence of considerable genetic variation among the assessed genotypes. Analysis of molecular variance showed that 51% of the genetic variation were between the gene pools, while 49% of the variation were within the gene pools. The genotypes were delineated into two distinct groups through the population structure, cluster and phylogenetic analyses. Genetically divergent genotypes such as DRK57, MW3915, NUA59, and VTTT924/4-4 with high yield and agronomic potential were identified, which may be useful for common bean improvement. 2021-12-18 2021-12-15T13:32:54Z 2021-12-15T13:32:54Z Journal Article https://hdl.handle.net/10568/116758 en Open Access application/pdf Public Library of Science Nkhata, W.; Shimelis, H.; Melis, R.; Chirwa, R.; Mzengeza, T.; Mathew, I.; Shayanowako, A. (2021) Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers. PLoS ONE 15(12): e0243238. ISSN: 1932-6203 |
| spellingShingle | population structure biodiversity germplasm collections plant morphology estructura de la población biodiversidad colecciones de material genético Nkhata, Wilson Shimelis, Hussein Melis, Rob Chirwa, Rowland Mzengeza, Tenyson Mathew, Isack Shayanowako, Admire Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers |
| title | Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers |
| title_full | Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers |
| title_fullStr | Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers |
| title_full_unstemmed | Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers |
| title_short | Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers |
| title_sort | population structure and genetic diversity analyses of common bean germplasm collections of east and southern africa using morphological traits and high density snp markers |
| topic | population structure biodiversity germplasm collections plant morphology estructura de la población biodiversidad colecciones de material genético |
| url | https://hdl.handle.net/10568/116758 |
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