RapGreen, an interactive software and web package to explore and analyze phylogenetic trees
RapGreen is a modular software package targeted at scientists handling large datasets for phylogenetic analysis. Its primary function is the graphical visualization and exploration of large trees. In addition, RapGreen offers a tree pattern search function to seek evolutionary scenarios among large...
| Main Authors: | , , , , , , , , |
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| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Oxford University Press
2021
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| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/115194 |
| _version_ | 1855523600370499584 |
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| author | Dufayard, Jean-François Bocs, Stéphanie Guignon, Valentin Larivière, Delphine Louis, Alexandra Oubda, Nicolas Rouard, Mathieu Ruíz, Manuel Lamotte, Frédéric de |
| author_browse | Bocs, Stéphanie Dufayard, Jean-François Guignon, Valentin Lamotte, Frédéric de Larivière, Delphine Louis, Alexandra Oubda, Nicolas Rouard, Mathieu Ruíz, Manuel |
| author_facet | Dufayard, Jean-François Bocs, Stéphanie Guignon, Valentin Larivière, Delphine Louis, Alexandra Oubda, Nicolas Rouard, Mathieu Ruíz, Manuel Lamotte, Frédéric de |
| author_sort | Dufayard, Jean-François |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | RapGreen is a modular software package targeted at scientists handling large datasets for phylogenetic analysis. Its primary function is the graphical visualization and exploration of large trees. In addition, RapGreen offers a tree pattern search function to seek evolutionary scenarios among large collections of phylogenetic trees. Other functionalities include tree reconciliation with a given species tree: the detection of duplication or loss events during evolution and tree rooting. Last but not least, RapGreen features the ability to integrate heterogeneous data while visualizing and otherwise analyzing phylogenetic trees |
| format | Journal Article |
| id | CGSpace115194 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2021 |
| publishDateRange | 2021 |
| publishDateSort | 2021 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace1151942025-11-11T18:47:23Z RapGreen, an interactive software and web package to explore and analyze phylogenetic trees Dufayard, Jean-François Bocs, Stéphanie Guignon, Valentin Larivière, Delphine Louis, Alexandra Oubda, Nicolas Rouard, Mathieu Ruíz, Manuel Lamotte, Frédéric de phylogeny software development digital technology filogenia desarrollo de programas informáticos tecnología digital RapGreen is a modular software package targeted at scientists handling large datasets for phylogenetic analysis. Its primary function is the graphical visualization and exploration of large trees. In addition, RapGreen offers a tree pattern search function to seek evolutionary scenarios among large collections of phylogenetic trees. Other functionalities include tree reconciliation with a given species tree: the detection of duplication or loss events during evolution and tree rooting. Last but not least, RapGreen features the ability to integrate heterogeneous data while visualizing and otherwise analyzing phylogenetic trees 2021-06-23 2021-09-28T10:25:01Z 2021-09-28T10:25:01Z Journal Article https://hdl.handle.net/10568/115194 en Open Access application/pdf Oxford University Press Dufayard, J.; Bocs, S.; Guignon, V.; Larivière, D.; Louis, A.; Oubda, N.; Rouard, M.; Ruiz, M.; de Lamotte, F. (2021) RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. NAR Genomics and Bioinformatics 3(3) ISSN: 2631-9268 |
| spellingShingle | phylogeny software development digital technology filogenia desarrollo de programas informáticos tecnología digital Dufayard, Jean-François Bocs, Stéphanie Guignon, Valentin Larivière, Delphine Louis, Alexandra Oubda, Nicolas Rouard, Mathieu Ruíz, Manuel Lamotte, Frédéric de RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
| title | RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
| title_full | RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
| title_fullStr | RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
| title_full_unstemmed | RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
| title_short | RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
| title_sort | rapgreen an interactive software and web package to explore and analyze phylogenetic trees |
| topic | phylogeny software development digital technology filogenia desarrollo de programas informáticos tecnología digital |
| url | https://hdl.handle.net/10568/115194 |
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