The pangenome of banana highlights differences between genera and genomes
Banana (Musaceae family) has a complex genetic history and includes a genus Musa with a variety of cultivated clones with edible fruits, Ensete species that are grown for their edible corm, and monospecific Musella whose generic status has been questioned. The most commonly exported banana cultivars...
| Main Authors: | , , , , , |
|---|---|
| Format: | Journal Article |
| Language: | Inglés |
| Published: |
Wiley
2022
|
| Subjects: | |
| Online Access: | https://hdl.handle.net/10568/114232 |
| _version_ | 1855523515755659264 |
|---|---|
| author | Rijzaani, Habib Bayer, Philipp E. Rouard, Mathieu Doležel, Jaroslav Batley, Jacqueline Edwards, David |
| author_browse | Batley, Jacqueline Bayer, Philipp E. Doležel, Jaroslav Edwards, David Rijzaani, Habib Rouard, Mathieu |
| author_facet | Rijzaani, Habib Bayer, Philipp E. Rouard, Mathieu Doležel, Jaroslav Batley, Jacqueline Edwards, David |
| author_sort | Rijzaani, Habib |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Banana (Musaceae family) has a complex genetic history and includes a genus Musa with a variety of cultivated clones with edible fruits, Ensete species that are grown for their edible corm, and monospecific Musella whose generic status has been questioned. The most commonly exported banana cultivars belong to Cavendish, a subgroup of Musa triploid cultivars, which is under threat by fungal pathogens, though there are also related species M. balbisiana Colla (B genome), M. textilis Née (T genome), and M. schizocarpa N. W. Simmonds (S genome), along with hybrids of these genomes, which potentially host genes of agronomic interest. Here we present the first cross-genus pangenome of banana, which contains representatives of the Musa and Ensete genera. Clusters based on gene presence–absence variation (PAV) clearly separate Musa and Ensete, while Musa is split further based on species. These results present the first pangenome study across genus boundaries and identifies genes that differentiate between Musaceae species, information that may support breeding programs in these crops. |
| format | Journal Article |
| id | CGSpace114232 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2022 |
| publishDateRange | 2022 |
| publishDateSort | 2022 |
| publisher | Wiley |
| publisherStr | Wiley |
| record_format | dspace |
| spelling | CGSpace1142322025-11-11T18:47:20Z The pangenome of banana highlights differences between genera and genomes Rijzaani, Habib Bayer, Philipp E. Rouard, Mathieu Doležel, Jaroslav Batley, Jacqueline Edwards, David bananas genus genomics plant breeding banano género (taxón) genómica fitomejoramiento Banana (Musaceae family) has a complex genetic history and includes a genus Musa with a variety of cultivated clones with edible fruits, Ensete species that are grown for their edible corm, and monospecific Musella whose generic status has been questioned. The most commonly exported banana cultivars belong to Cavendish, a subgroup of Musa triploid cultivars, which is under threat by fungal pathogens, though there are also related species M. balbisiana Colla (B genome), M. textilis Née (T genome), and M. schizocarpa N. W. Simmonds (S genome), along with hybrids of these genomes, which potentially host genes of agronomic interest. Here we present the first cross-genus pangenome of banana, which contains representatives of the Musa and Ensete genera. Clusters based on gene presence–absence variation (PAV) clearly separate Musa and Ensete, while Musa is split further based on species. These results present the first pangenome study across genus boundaries and identifies genes that differentiate between Musaceae species, information that may support breeding programs in these crops. 2022-03 2021-07-08T14:44:55Z 2021-07-08T14:44:55Z Journal Article https://hdl.handle.net/10568/114232 en Open Access application/pdf Wiley Rijzaani, H.; Bayer, P.E.; Rouard, M.; Doležel, J.; Batley, J.; Edwards, D. (2021) The pangenome of banana highlights differences between genera and genomes. The Plant Genome, e20100: 11 p. ISSN: 1940-3372 |
| spellingShingle | bananas genus genomics plant breeding banano género (taxón) genómica fitomejoramiento Rijzaani, Habib Bayer, Philipp E. Rouard, Mathieu Doležel, Jaroslav Batley, Jacqueline Edwards, David The pangenome of banana highlights differences between genera and genomes |
| title | The pangenome of banana highlights differences between genera and genomes |
| title_full | The pangenome of banana highlights differences between genera and genomes |
| title_fullStr | The pangenome of banana highlights differences between genera and genomes |
| title_full_unstemmed | The pangenome of banana highlights differences between genera and genomes |
| title_short | The pangenome of banana highlights differences between genera and genomes |
| title_sort | pangenome of banana highlights differences between genera and genomes |
| topic | bananas genus genomics plant breeding banano género (taxón) genómica fitomejoramiento |
| url | https://hdl.handle.net/10568/114232 |
| work_keys_str_mv | AT rijzaanihabib thepangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT bayerphilippe thepangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT rouardmathieu thepangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT dolezeljaroslav thepangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT batleyjacqueline thepangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT edwardsdavid thepangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT rijzaanihabib pangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT bayerphilippe pangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT rouardmathieu pangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT dolezeljaroslav pangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT batleyjacqueline pangenomeofbananahighlightsdifferencesbetweengeneraandgenomes AT edwardsdavid pangenomeofbananahighlightsdifferencesbetweengeneraandgenomes |