Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean
Lima bean (Phaseolus lunatus L.), one of the five domesticated Phaseolus bean crops, shows a wide range of ecological adaptations along its distribution range from Mexico to Argentina. These adaptations make it a promising crop for improving food security under predicted scenarios of climate change...
| Autores principales: | , , , , , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Springer
2021
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/111221 |
| _version_ | 1855520495837904896 |
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| author | García, Tatiana Duitama, Jorge Smolenski-Zullo, Stephanie Gil, Juanita Ariani, Andrea Dohle, Sarah Palkovic, Antonia Skeen, Paola Bermudez-Santana, Clara Isabel Debouck, Daniel G. Martínez Castillo, Jaime Gepts, Paul L. Chacón-Sánchez, Maria Isabel |
| author_browse | Ariani, Andrea Bermudez-Santana, Clara Isabel Chacón-Sánchez, Maria Isabel Debouck, Daniel G. Dohle, Sarah Duitama, Jorge García, Tatiana Gepts, Paul L. Gil, Juanita Martínez Castillo, Jaime Palkovic, Antonia Skeen, Paola Smolenski-Zullo, Stephanie |
| author_facet | García, Tatiana Duitama, Jorge Smolenski-Zullo, Stephanie Gil, Juanita Ariani, Andrea Dohle, Sarah Palkovic, Antonia Skeen, Paola Bermudez-Santana, Clara Isabel Debouck, Daniel G. Martínez Castillo, Jaime Gepts, Paul L. Chacón-Sánchez, Maria Isabel |
| author_sort | García, Tatiana |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Lima bean (Phaseolus lunatus L.), one of the five domesticated Phaseolus bean crops, shows a wide range of ecological adaptations along its distribution range from Mexico to Argentina. These adaptations make it a promising crop for improving food security under predicted scenarios of climate change in Latin America and elsewhere. In this work, we combine long and short read sequencing technologies with a dense genetic map from a biparental population to obtain the chromosome-level genome assembly for Lima bean. Annotation of 28,326 gene models show high diversity among 1917 genes with conserved domains related to disease resistance. Structural comparison across 22,180 orthologs with common bean reveals high genome synteny and five large intrachromosomal rearrangements. Population genomic analyses show that wild Lima bean is organized into six clusters with mostly non-overlapping distributions and that Mesomerican landraces can be further subdivided into three subclusters. RNA-seq data reveal 4275 differentially expressed genes, which can be related to pod dehiscence and seed development. We expect the resources presented here to serve as a solid basis to achieve a comprehensive view of the degree of convergent evolution of Phaseolus species under domestication and provide tools and information for breeding for climate change resiliency. |
| format | Journal Article |
| id | CGSpace111221 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2021 |
| publishDateRange | 2021 |
| publishDateSort | 2021 |
| publisher | Springer |
| publisherStr | Springer |
| record_format | dspace |
| spelling | CGSpace1112212025-11-11T17:45:50Z Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean García, Tatiana Duitama, Jorge Smolenski-Zullo, Stephanie Gil, Juanita Ariani, Andrea Dohle, Sarah Palkovic, Antonia Skeen, Paola Bermudez-Santana, Clara Isabel Debouck, Daniel G. Martínez Castillo, Jaime Gepts, Paul L. Chacón-Sánchez, Maria Isabel genetic markers genetic variation domestication ribonucleases land races marcadores genéticos variación genética domesticación ribonucleasas razas indigenas phaseolus Lima bean (Phaseolus lunatus L.), one of the five domesticated Phaseolus bean crops, shows a wide range of ecological adaptations along its distribution range from Mexico to Argentina. These adaptations make it a promising crop for improving food security under predicted scenarios of climate change in Latin America and elsewhere. In this work, we combine long and short read sequencing technologies with a dense genetic map from a biparental population to obtain the chromosome-level genome assembly for Lima bean. Annotation of 28,326 gene models show high diversity among 1917 genes with conserved domains related to disease resistance. Structural comparison across 22,180 orthologs with common bean reveals high genome synteny and five large intrachromosomal rearrangements. Population genomic analyses show that wild Lima bean is organized into six clusters with mostly non-overlapping distributions and that Mesomerican landraces can be further subdivided into three subclusters. RNA-seq data reveal 4275 differentially expressed genes, which can be related to pod dehiscence and seed development. We expect the resources presented here to serve as a solid basis to achieve a comprehensive view of the degree of convergent evolution of Phaseolus species under domestication and provide tools and information for breeding for climate change resiliency. 2021-02 2021-02-09T15:14:08Z 2021-02-09T15:14:08Z Journal Article https://hdl.handle.net/10568/111221 en Open Access application/pdf Springer García, T.; Duitama, J.; Smolenski-Zullo, S.; Gil, J.; Ariani, A.; Dohle, S.; Palkovic, A.; Skeen, P.; Bermudez-Santana, C.I.; Debouck, D.G.; Martínez-Castillo, J.; Gepts, P.; Chacón-Sánchez, M.I. (2021) Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean. Nature Communications 12(702) p. 1-17. ISSN: 2041-1723 |
| spellingShingle | genetic markers genetic variation domestication ribonucleases land races marcadores genéticos variación genética domesticación ribonucleasas razas indigenas phaseolus García, Tatiana Duitama, Jorge Smolenski-Zullo, Stephanie Gil, Juanita Ariani, Andrea Dohle, Sarah Palkovic, Antonia Skeen, Paola Bermudez-Santana, Clara Isabel Debouck, Daniel G. Martínez Castillo, Jaime Gepts, Paul L. Chacón-Sánchez, Maria Isabel Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean |
| title | Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean |
| title_full | Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean |
| title_fullStr | Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean |
| title_full_unstemmed | Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean |
| title_short | Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean |
| title_sort | comprehensive genomic resources related to domestication and crop improvement traits in lima bean |
| topic | genetic markers genetic variation domestication ribonucleases land races marcadores genéticos variación genética domesticación ribonucleasas razas indigenas phaseolus |
| url | https://hdl.handle.net/10568/111221 |
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