The ontologies community of practice: a CGIAR initiative for Big Data in agrifood systems
Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture and agrifood systems requires quality data labeling or annotation in order to be interoperable. As recommended by the FAIR principles, data, labels, and metadata must use controlled vocabularies and onto...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Elsevier
2020
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| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/109682 |
| _version_ | 1855538122182361088 |
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| author | Arnaud, Elizabeth Laporte, Marie-Angélique Kim, Soonho Aubert, Céline Leonelli, Sabina Miro, Berta Cooper, Laurel D. Jaiswal, Pankaj Kruseman, Gideon K. Shrestha, Rosemary Buttigieg, Pier Luigi Mungall, Christopher J. Pietragalla, Julian Agbona, Afolabi Muliro, Jacqueline Detras, Jeffrey Hualla, Vilma Rathore, Abhishek Das, Roma Rani Dieng, Ibnou Bauchet, Guillaume J. Menda, Naama Pommier, Cyril Shaw, Felix Lyon, David Mwanzia, Leroy Juarez, Henry Bonaiuti, Enrico Chiputwa, Brian Obileye, Olatunbosun Auzoux, Sandrine Yeumo, Esther Dzalé Mueller, Lukas A. Silverstein, Kevin Lafargue, Alexandra Antezana, Erick Devare, Medha King, Brian |
| author_browse | Agbona, Afolabi Antezana, Erick Arnaud, Elizabeth Aubert, Céline Auzoux, Sandrine Bauchet, Guillaume J. Bonaiuti, Enrico Buttigieg, Pier Luigi Chiputwa, Brian Cooper, Laurel D. Das, Roma Rani Detras, Jeffrey Devare, Medha Dieng, Ibnou Hualla, Vilma Jaiswal, Pankaj Juarez, Henry Kim, Soonho King, Brian Kruseman, Gideon K. Lafargue, Alexandra Laporte, Marie-Angélique Leonelli, Sabina Lyon, David Menda, Naama Miro, Berta Mueller, Lukas A. Muliro, Jacqueline Mungall, Christopher J. Mwanzia, Leroy Obileye, Olatunbosun Pietragalla, Julian Pommier, Cyril Rathore, Abhishek Shaw, Felix Shrestha, Rosemary Silverstein, Kevin Yeumo, Esther Dzalé |
| author_facet | Arnaud, Elizabeth Laporte, Marie-Angélique Kim, Soonho Aubert, Céline Leonelli, Sabina Miro, Berta Cooper, Laurel D. Jaiswal, Pankaj Kruseman, Gideon K. Shrestha, Rosemary Buttigieg, Pier Luigi Mungall, Christopher J. Pietragalla, Julian Agbona, Afolabi Muliro, Jacqueline Detras, Jeffrey Hualla, Vilma Rathore, Abhishek Das, Roma Rani Dieng, Ibnou Bauchet, Guillaume J. Menda, Naama Pommier, Cyril Shaw, Felix Lyon, David Mwanzia, Leroy Juarez, Henry Bonaiuti, Enrico Chiputwa, Brian Obileye, Olatunbosun Auzoux, Sandrine Yeumo, Esther Dzalé Mueller, Lukas A. Silverstein, Kevin Lafargue, Alexandra Antezana, Erick Devare, Medha King, Brian |
| author_sort | Arnaud, Elizabeth |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture and agrifood systems requires quality data labeling or annotation in order to be interoperable. As recommended by the FAIR principles, data, labels, and metadata must use controlled vocabularies and ontologies that are popular in the knowledge domain and commonly used by the community. Despite the existence of robust ontologies in the Life Sciences, there is currently no comprehensive full set of ontologies recommended for data annotation across agricultural research disciplines. In this paper, we discuss the added value of
the Ontologies Community of Practice (CoP) of the CGIAR Platform for Big Data in Agriculture for harnessing relevant expertise in ontology development and identifying innovative solutions that support quality data annotation. The Ontologies CoP stimulates knowledge sharing among stakeholders, such as researchers, data managers, domain experts, experts in ontology design, and platform development teams. |
| format | Journal Article |
| id | CGSpace109682 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2020 |
| publishDateRange | 2020 |
| publishDateSort | 2020 |
| publisher | Elsevier |
| publisherStr | Elsevier |
| record_format | dspace |
| spelling | CGSpace1096822025-11-12T05:59:05Z The ontologies community of practice: a CGIAR initiative for Big Data in agrifood systems Arnaud, Elizabeth Laporte, Marie-Angélique Kim, Soonho Aubert, Céline Leonelli, Sabina Miro, Berta Cooper, Laurel D. Jaiswal, Pankaj Kruseman, Gideon K. Shrestha, Rosemary Buttigieg, Pier Luigi Mungall, Christopher J. Pietragalla, Julian Agbona, Afolabi Muliro, Jacqueline Detras, Jeffrey Hualla, Vilma Rathore, Abhishek Das, Roma Rani Dieng, Ibnou Bauchet, Guillaume J. Menda, Naama Pommier, Cyril Shaw, Felix Lyon, David Mwanzia, Leroy Juarez, Henry Bonaiuti, Enrico Chiputwa, Brian Obileye, Olatunbosun Auzoux, Sandrine Yeumo, Esther Dzalé Mueller, Lukas A. Silverstein, Kevin Lafargue, Alexandra Antezana, Erick Devare, Medha King, Brian control systems access to information information technology data collection sistemas de controlo acceso a la informatión tecnología de la inforatión ontology agriculture agrifood systems crop production breeding phenotypes genotypes ontologies data food systems cgiar bibliographic information semantic standards labelling knowledge big data linked open data capacity development Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture and agrifood systems requires quality data labeling or annotation in order to be interoperable. As recommended by the FAIR principles, data, labels, and metadata must use controlled vocabularies and ontologies that are popular in the knowledge domain and commonly used by the community. Despite the existence of robust ontologies in the Life Sciences, there is currently no comprehensive full set of ontologies recommended for data annotation across agricultural research disciplines. In this paper, we discuss the added value of the Ontologies Community of Practice (CoP) of the CGIAR Platform for Big Data in Agriculture for harnessing relevant expertise in ontology development and identifying innovative solutions that support quality data annotation. The Ontologies CoP stimulates knowledge sharing among stakeholders, such as researchers, data managers, domain experts, experts in ontology design, and platform development teams. 2020-10-09 2020-09-29T09:00:06Z 2020-09-29T09:00:06Z Journal Article https://hdl.handle.net/10568/109682 en https://hdl.handle.net/10568/105714 Open Access application/pdf Elsevier Arnaud, E.; Laporte, M.-An.; Kim, S.; Aubert, C.; Leonelli, S.; Miro, B.; Cooper, L.; Jaiswal, P.; Kruseman, G.; Shrestha, R.; Buttigieg, P.L.; Mungall, C.J.; Pietragalla, J.; Agbona, A.; Muliro, J.; Detras, J.; Hualla, V.; Rathore, A.; Das, R.R.; Dieng, I.; Bauchet, G.; Menda, N.; Pommier, C.; Shaw, F.; Lyon, D.; Mwanzia, L.; Juarez, H.; Bonaiuti, E.; Chiputwa, B.; Obileye, O.; Auzoux, S.; Yeumo, E.D.; Mueller, L.A.; Silverstein, K.; Lafargue, A.; Antezana, E.; Devare, M.; King, B. The ontologies community of practice: a CGIAR initiative for Big Data in agrifood systems. Patterns 1:100105. 12 p. ISSN: 2666-3899 |
| spellingShingle | control systems access to information information technology data collection sistemas de controlo acceso a la informatión tecnología de la inforatión ontology agriculture agrifood systems crop production breeding phenotypes genotypes ontologies data food systems cgiar bibliographic information semantic standards labelling knowledge big data linked open data capacity development Arnaud, Elizabeth Laporte, Marie-Angélique Kim, Soonho Aubert, Céline Leonelli, Sabina Miro, Berta Cooper, Laurel D. Jaiswal, Pankaj Kruseman, Gideon K. Shrestha, Rosemary Buttigieg, Pier Luigi Mungall, Christopher J. Pietragalla, Julian Agbona, Afolabi Muliro, Jacqueline Detras, Jeffrey Hualla, Vilma Rathore, Abhishek Das, Roma Rani Dieng, Ibnou Bauchet, Guillaume J. Menda, Naama Pommier, Cyril Shaw, Felix Lyon, David Mwanzia, Leroy Juarez, Henry Bonaiuti, Enrico Chiputwa, Brian Obileye, Olatunbosun Auzoux, Sandrine Yeumo, Esther Dzalé Mueller, Lukas A. Silverstein, Kevin Lafargue, Alexandra Antezana, Erick Devare, Medha King, Brian The ontologies community of practice: a CGIAR initiative for Big Data in agrifood systems |
| title | The ontologies community of practice: a CGIAR initiative for Big Data in agrifood systems |
| title_full | The ontologies community of practice: a CGIAR initiative for Big Data in agrifood systems |
| title_fullStr | The ontologies community of practice: a CGIAR initiative for Big Data in agrifood systems |
| title_full_unstemmed | The ontologies community of practice: a CGIAR initiative for Big Data in agrifood systems |
| title_short | The ontologies community of practice: a CGIAR initiative for Big Data in agrifood systems |
| title_sort | ontologies community of practice a cgiar initiative for big data in agrifood systems |
| topic | control systems access to information information technology data collection sistemas de controlo acceso a la informatión tecnología de la inforatión ontology agriculture agrifood systems crop production breeding phenotypes genotypes ontologies data food systems cgiar bibliographic information semantic standards labelling knowledge big data linked open data capacity development |
| url | https://hdl.handle.net/10568/109682 |
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