Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress
These datasets contain phenotypic and genotypic data of a panel of elite Andean breeding lines of common bean (Phaseolus vulgaris L.) from CIAT. This population has been tested in twelve yield trials carried out in Palmira and Darien (Colombia) between 2013 and 2018 to assess its performance under i...
| Main Authors: | , , , , , , , , |
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| Format: | Conjunto de datos |
| Language: | Inglés |
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International Center for Tropical Agriculture
2020
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| Online Access: | https://hdl.handle.net/10568/107888 |
| _version_ | 1855538496756776960 |
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| author | Keller, Beat Ariza-Suárez, Daniel Hoz, Juan Fernando de la Aparicio, Johan Steven Portilla Benavides, Ana Elisabeth Buendia, Hector Fabio Mayor, Victor Manuel Studer, Bruno Raatz, Bodo |
| author_browse | Aparicio, Johan Steven Ariza-Suárez, Daniel Buendia, Hector Fabio Hoz, Juan Fernando de la Keller, Beat Mayor, Victor Manuel Portilla Benavides, Ana Elisabeth Raatz, Bodo Studer, Bruno |
| author_facet | Keller, Beat Ariza-Suárez, Daniel Hoz, Juan Fernando de la Aparicio, Johan Steven Portilla Benavides, Ana Elisabeth Buendia, Hector Fabio Mayor, Victor Manuel Studer, Bruno Raatz, Bodo |
| author_sort | Keller, Beat |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | These datasets contain phenotypic and genotypic data of a panel of elite Andean breeding lines of common bean (Phaseolus vulgaris L.) from CIAT. This population has been tested in twelve yield trials carried out in Palmira and Darien (Colombia) between 2013 and 2018 to assess its performance under irrigated, drought and variable soil P conditions. These trials were laid out in the field with an alpha-lattice experimental design using two to three replicates, and a non-replicated trial in 2016. Meteorological data for these trials is also provided. Different agronomic traits were evaluated including Days to Flowering (DF), Days to Physiological Maturity (DPM), 100 seed weight (100SdW) and Yield (Yd). The agronomic performance of the population was modeled using linear mixed models with spatial correction. From these models, best linear unbiased estimators (BLUEs) and their corresponding standard errors (SE) were obtained. This population was genotyped by sequencing (GBS) using the ApeKI-based restriction digestion. The genotypic data is presented in a variant call format (VCF) file of 5,820 SNPs and 481 lines. The genotypic matrix was imputed using Beagle (v4.1). These datasets were used to test genomic prediction models on the panel in order to assess their prediction ability under different scenarios and parameter settings. |
| format | Conjunto de datos |
| id | CGSpace107888 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2020 |
| publishDateRange | 2020 |
| publishDateSort | 2020 |
| publisher | International Center for Tropical Agriculture |
| publisherStr | International Center for Tropical Agriculture |
| record_format | dspace |
| spelling | CGSpace1078882024-09-09T10:04:48Z Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress Keller, Beat Ariza-Suárez, Daniel Hoz, Juan Fernando de la Aparicio, Johan Steven Portilla Benavides, Ana Elisabeth Buendia, Hector Fabio Mayor, Victor Manuel Studer, Bruno Raatz, Bodo genomic selection plant breeding drought phosphorus beans fósforo mejoramiento de plantas sequía selección asistida por marcadores frijol agrobiodiversity agrobiodiversidad These datasets contain phenotypic and genotypic data of a panel of elite Andean breeding lines of common bean (Phaseolus vulgaris L.) from CIAT. This population has been tested in twelve yield trials carried out in Palmira and Darien (Colombia) between 2013 and 2018 to assess its performance under irrigated, drought and variable soil P conditions. These trials were laid out in the field with an alpha-lattice experimental design using two to three replicates, and a non-replicated trial in 2016. Meteorological data for these trials is also provided. Different agronomic traits were evaluated including Days to Flowering (DF), Days to Physiological Maturity (DPM), 100 seed weight (100SdW) and Yield (Yd). The agronomic performance of the population was modeled using linear mixed models with spatial correction. From these models, best linear unbiased estimators (BLUEs) and their corresponding standard errors (SE) were obtained. This population was genotyped by sequencing (GBS) using the ApeKI-based restriction digestion. The genotypic data is presented in a variant call format (VCF) file of 5,820 SNPs and 481 lines. The genotypic matrix was imputed using Beagle (v4.1). These datasets were used to test genomic prediction models on the panel in order to assess their prediction ability under different scenarios and parameter settings. 2020 2020-03-30T00:10:06Z 2020-03-30T00:10:06Z Dataset https://hdl.handle.net/10568/107888 en Open Access International Center for Tropical Agriculture Keller, B.; Ariza-Suarez, D.; De la Hoz, J.; Aparicio, J.S.; Portilla Benavides, A.E.; Buendia, H.F.; Mayor, V.M.; Studer, B.; Raatz, B. (2020). Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress. https://doi.org/10.7910/DVN/XCD67U, Harvard Dataverse, V1, UNF:6:2ucpalum7jucY0dQs56Z3A== [fileUNF] |
| spellingShingle | genomic selection plant breeding drought phosphorus beans fósforo mejoramiento de plantas sequía selección asistida por marcadores frijol agrobiodiversity agrobiodiversidad Keller, Beat Ariza-Suárez, Daniel Hoz, Juan Fernando de la Aparicio, Johan Steven Portilla Benavides, Ana Elisabeth Buendia, Hector Fabio Mayor, Victor Manuel Studer, Bruno Raatz, Bodo Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress |
| title | Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress |
| title_full | Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress |
| title_fullStr | Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress |
| title_full_unstemmed | Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress |
| title_short | Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress |
| title_sort | replication data for genomic prediction of agronomic traits in common bean under environmental stress |
| topic | genomic selection plant breeding drought phosphorus beans fósforo mejoramiento de plantas sequía selección asistida por marcadores frijol agrobiodiversity agrobiodiversidad |
| url | https://hdl.handle.net/10568/107888 |
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