BrAPI - an application programming interface for plant breeding applications
Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data is often stored on mult...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Journal Article |
| Lenguaje: | Inglés |
| Publicado: |
Oxford University Press
2019
|
| Materias: | |
| Acceso en línea: | https://hdl.handle.net/10568/103792 |
| _version_ | 1855523270007193600 |
|---|---|
| author | Selby, Peter Abbeloos, Rafael Backlund, Jan Erik Basterrechea Salido, Martin Bauchet, Guillaume Benites-Alfaro, Omar E Birkett, Clay Calaminos, Viana C Carceller, Pierre Cornut, Guillaume Vasques Costa, Bruno Edwards, Jeremy D Finkers, Richard Yanxin Gao, Star Ghaffar, Mehmood Glaser, Philip Guignon, Valentin Hok, Puthick Kilian, Andrzej König, Patrick Lagare, Jack Elendil B Lange, Matthias Laporte, Marie-Angélique Larmande, Pierre LeBauer, David S Lyon, David A Marshall, David S Matthews, Dave Milne, Iain Mistry, Naymesh Morales, Nicolas Mueller, Lukas A Neveu, Pascal Papoutsoglou, Evangelia Pearce, Brian Perez-Masias, Ivan Pommier, Cyril Ramírez-González, Ricardo H Rathore, Abhishek Raquel, Angel Manica Raubach, Sebastian Rife, Trevor Robbins, Kelly Rouard, Mathieu Sarma, Chaitanya Scholz, Uwe Sempéré, Guilhem Shaw, Paul D Simon, Reinhard Soldevilla, Nahuel Stephen, Gordon Sun, Qi Tovar, Clarysabel Uszynski, Grzegorz Verouden, Maikel |
| author_browse | Abbeloos, Rafael Backlund, Jan Erik Basterrechea Salido, Martin Bauchet, Guillaume Benites-Alfaro, Omar E Birkett, Clay Calaminos, Viana C Carceller, Pierre Cornut, Guillaume Edwards, Jeremy D Finkers, Richard Ghaffar, Mehmood Glaser, Philip Guignon, Valentin Hok, Puthick Kilian, Andrzej König, Patrick Lagare, Jack Elendil B Lange, Matthias Laporte, Marie-Angélique Larmande, Pierre LeBauer, David S Lyon, David A Marshall, David S Matthews, Dave Milne, Iain Mistry, Naymesh Morales, Nicolas Mueller, Lukas A Neveu, Pascal Papoutsoglou, Evangelia Pearce, Brian Perez-Masias, Ivan Pommier, Cyril Ramírez-González, Ricardo H Raquel, Angel Manica Rathore, Abhishek Raubach, Sebastian Rife, Trevor Robbins, Kelly Rouard, Mathieu Sarma, Chaitanya Scholz, Uwe Selby, Peter Sempéré, Guilhem Shaw, Paul D Simon, Reinhard Soldevilla, Nahuel Stephen, Gordon Sun, Qi Tovar, Clarysabel Uszynski, Grzegorz Vasques Costa, Bruno Verouden, Maikel Yanxin Gao, Star |
| author_facet | Selby, Peter Abbeloos, Rafael Backlund, Jan Erik Basterrechea Salido, Martin Bauchet, Guillaume Benites-Alfaro, Omar E Birkett, Clay Calaminos, Viana C Carceller, Pierre Cornut, Guillaume Vasques Costa, Bruno Edwards, Jeremy D Finkers, Richard Yanxin Gao, Star Ghaffar, Mehmood Glaser, Philip Guignon, Valentin Hok, Puthick Kilian, Andrzej König, Patrick Lagare, Jack Elendil B Lange, Matthias Laporte, Marie-Angélique Larmande, Pierre LeBauer, David S Lyon, David A Marshall, David S Matthews, Dave Milne, Iain Mistry, Naymesh Morales, Nicolas Mueller, Lukas A Neveu, Pascal Papoutsoglou, Evangelia Pearce, Brian Perez-Masias, Ivan Pommier, Cyril Ramírez-González, Ricardo H Rathore, Abhishek Raquel, Angel Manica Raubach, Sebastian Rife, Trevor Robbins, Kelly Rouard, Mathieu Sarma, Chaitanya Scholz, Uwe Sempéré, Guilhem Shaw, Paul D Simon, Reinhard Soldevilla, Nahuel Stephen, Gordon Sun, Qi Tovar, Clarysabel Uszynski, Grzegorz Verouden, Maikel |
| author_sort | Selby, Peter |
| collection | Repository of Agricultural Research Outputs (CGSpace) |
| description | Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data is often stored on multiple systems. As analyses of interest increasingly require aggregation of datasets from diverse sources, data exchange between disparate systems becomes a challenge.
RESULTS:
To facilitate interoperability among breeding applications, we present the public plant Breeding Application Programming Interface (BrAPI). BrAPI is a standardized web service Application Programming Interface (API) specification. The development of BrAPI is a collaborative, community-based initiative involving a growing global community of over a hundred participants representing several dozen institutions and companies. Development of such a standard is recognized as critical to a number of important large breeding system initiatives as a foundational technology. Â The focus of the first version of the API is on providing services for connecting systems and retrieving basic breeding data including germplasm, study, observation, and marker data. A number of BrAPI-enabled applications, termed BrAPPs, have been written, that take advantage of the emerging support of BrAPI by many databases |
| format | Journal Article |
| id | CGSpace103792 |
| institution | CGIAR Consortium |
| language | Inglés |
| publishDate | 2019 |
| publishDateRange | 2019 |
| publishDateSort | 2019 |
| publisher | Oxford University Press |
| publisherStr | Oxford University Press |
| record_format | dspace |
| spelling | CGSpace1037922026-01-06T12:03:45Z BrAPI - an application programming interface for plant breeding applications Selby, Peter Abbeloos, Rafael Backlund, Jan Erik Basterrechea Salido, Martin Bauchet, Guillaume Benites-Alfaro, Omar E Birkett, Clay Calaminos, Viana C Carceller, Pierre Cornut, Guillaume Vasques Costa, Bruno Edwards, Jeremy D Finkers, Richard Yanxin Gao, Star Ghaffar, Mehmood Glaser, Philip Guignon, Valentin Hok, Puthick Kilian, Andrzej König, Patrick Lagare, Jack Elendil B Lange, Matthias Laporte, Marie-Angélique Larmande, Pierre LeBauer, David S Lyon, David A Marshall, David S Matthews, Dave Milne, Iain Mistry, Naymesh Morales, Nicolas Mueller, Lukas A Neveu, Pascal Papoutsoglou, Evangelia Pearce, Brian Perez-Masias, Ivan Pommier, Cyril Ramírez-González, Ricardo H Rathore, Abhishek Raquel, Angel Manica Raubach, Sebastian Rife, Trevor Robbins, Kelly Rouard, Mathieu Sarma, Chaitanya Scholz, Uwe Sempéré, Guilhem Shaw, Paul D Simon, Reinhard Soldevilla, Nahuel Stephen, Gordon Sun, Qi Tovar, Clarysabel Uszynski, Grzegorz Verouden, Maikel plant breeding genomics data data management databases interoperability Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data is often stored on multiple systems. As analyses of interest increasingly require aggregation of datasets from diverse sources, data exchange between disparate systems becomes a challenge. RESULTS: To facilitate interoperability among breeding applications, we present the public plant Breeding Application Programming Interface (BrAPI). BrAPI is a standardized web service Application Programming Interface (API) specification. The development of BrAPI is a collaborative, community-based initiative involving a growing global community of over a hundred participants representing several dozen institutions and companies. Development of such a standard is recognized as critical to a number of important large breeding system initiatives as a foundational technology. Â The focus of the first version of the API is on providing services for connecting systems and retrieving basic breeding data including germplasm, study, observation, and marker data. A number of BrAPI-enabled applications, termed BrAPPs, have been written, that take advantage of the emerging support of BrAPI by many databases 2019-10-15 2019-09-30T13:13:25Z 2019-09-30T13:13:25Z Journal Article https://hdl.handle.net/10568/103792 en Open Access application/pdf Oxford University Press Selby, P.; Abbeloos, R.; Backlund, J.E. (et al.) BrAPI - an application programming interface for plant breeding applications. Bioinformatics, btz190. ISSN: 1367-4803 |
| spellingShingle | plant breeding genomics data data management databases interoperability Selby, Peter Abbeloos, Rafael Backlund, Jan Erik Basterrechea Salido, Martin Bauchet, Guillaume Benites-Alfaro, Omar E Birkett, Clay Calaminos, Viana C Carceller, Pierre Cornut, Guillaume Vasques Costa, Bruno Edwards, Jeremy D Finkers, Richard Yanxin Gao, Star Ghaffar, Mehmood Glaser, Philip Guignon, Valentin Hok, Puthick Kilian, Andrzej König, Patrick Lagare, Jack Elendil B Lange, Matthias Laporte, Marie-Angélique Larmande, Pierre LeBauer, David S Lyon, David A Marshall, David S Matthews, Dave Milne, Iain Mistry, Naymesh Morales, Nicolas Mueller, Lukas A Neveu, Pascal Papoutsoglou, Evangelia Pearce, Brian Perez-Masias, Ivan Pommier, Cyril Ramírez-González, Ricardo H Rathore, Abhishek Raquel, Angel Manica Raubach, Sebastian Rife, Trevor Robbins, Kelly Rouard, Mathieu Sarma, Chaitanya Scholz, Uwe Sempéré, Guilhem Shaw, Paul D Simon, Reinhard Soldevilla, Nahuel Stephen, Gordon Sun, Qi Tovar, Clarysabel Uszynski, Grzegorz Verouden, Maikel BrAPI - an application programming interface for plant breeding applications |
| title | BrAPI - an application programming interface for plant breeding applications |
| title_full | BrAPI - an application programming interface for plant breeding applications |
| title_fullStr | BrAPI - an application programming interface for plant breeding applications |
| title_full_unstemmed | BrAPI - an application programming interface for plant breeding applications |
| title_short | BrAPI - an application programming interface for plant breeding applications |
| title_sort | brapi an application programming interface for plant breeding applications |
| topic | plant breeding genomics data data management databases interoperability |
| url | https://hdl.handle.net/10568/103792 |
| work_keys_str_mv | AT selbypeter brapianapplicationprogramminginterfaceforplantbreedingapplications AT abbeloosrafael brapianapplicationprogramminginterfaceforplantbreedingapplications AT backlundjanerik brapianapplicationprogramminginterfaceforplantbreedingapplications AT basterrecheasalidomartin brapianapplicationprogramminginterfaceforplantbreedingapplications AT bauchetguillaume brapianapplicationprogramminginterfaceforplantbreedingapplications AT benitesalfaroomare brapianapplicationprogramminginterfaceforplantbreedingapplications AT birkettclay brapianapplicationprogramminginterfaceforplantbreedingapplications AT calaminosvianac brapianapplicationprogramminginterfaceforplantbreedingapplications AT carcellerpierre brapianapplicationprogramminginterfaceforplantbreedingapplications AT cornutguillaume brapianapplicationprogramminginterfaceforplantbreedingapplications AT vasquescostabruno brapianapplicationprogramminginterfaceforplantbreedingapplications AT edwardsjeremyd brapianapplicationprogramminginterfaceforplantbreedingapplications AT finkersrichard brapianapplicationprogramminginterfaceforplantbreedingapplications AT yanxingaostar brapianapplicationprogramminginterfaceforplantbreedingapplications AT ghaffarmehmood brapianapplicationprogramminginterfaceforplantbreedingapplications AT glaserphilip brapianapplicationprogramminginterfaceforplantbreedingapplications AT guignonvalentin brapianapplicationprogramminginterfaceforplantbreedingapplications AT hokputhick brapianapplicationprogramminginterfaceforplantbreedingapplications AT kilianandrzej brapianapplicationprogramminginterfaceforplantbreedingapplications AT konigpatrick brapianapplicationprogramminginterfaceforplantbreedingapplications AT lagarejackelendilb brapianapplicationprogramminginterfaceforplantbreedingapplications AT langematthias brapianapplicationprogramminginterfaceforplantbreedingapplications AT laportemarieangelique brapianapplicationprogramminginterfaceforplantbreedingapplications AT larmandepierre brapianapplicationprogramminginterfaceforplantbreedingapplications AT lebauerdavids brapianapplicationprogramminginterfaceforplantbreedingapplications AT lyondavida brapianapplicationprogramminginterfaceforplantbreedingapplications AT marshalldavids brapianapplicationprogramminginterfaceforplantbreedingapplications AT matthewsdave brapianapplicationprogramminginterfaceforplantbreedingapplications AT milneiain brapianapplicationprogramminginterfaceforplantbreedingapplications AT mistrynaymesh brapianapplicationprogramminginterfaceforplantbreedingapplications AT moralesnicolas brapianapplicationprogramminginterfaceforplantbreedingapplications AT muellerlukasa brapianapplicationprogramminginterfaceforplantbreedingapplications AT neveupascal brapianapplicationprogramminginterfaceforplantbreedingapplications AT papoutsoglouevangelia brapianapplicationprogramminginterfaceforplantbreedingapplications AT pearcebrian brapianapplicationprogramminginterfaceforplantbreedingapplications AT perezmasiasivan brapianapplicationprogramminginterfaceforplantbreedingapplications AT pommiercyril brapianapplicationprogramminginterfaceforplantbreedingapplications AT ramirezgonzalezricardoh brapianapplicationprogramminginterfaceforplantbreedingapplications AT rathoreabhishek brapianapplicationprogramminginterfaceforplantbreedingapplications AT raquelangelmanica brapianapplicationprogramminginterfaceforplantbreedingapplications AT raubachsebastian brapianapplicationprogramminginterfaceforplantbreedingapplications AT rifetrevor brapianapplicationprogramminginterfaceforplantbreedingapplications AT robbinskelly brapianapplicationprogramminginterfaceforplantbreedingapplications AT rouardmathieu brapianapplicationprogramminginterfaceforplantbreedingapplications AT sarmachaitanya brapianapplicationprogramminginterfaceforplantbreedingapplications AT scholzuwe brapianapplicationprogramminginterfaceforplantbreedingapplications AT sempereguilhem brapianapplicationprogramminginterfaceforplantbreedingapplications AT shawpauld brapianapplicationprogramminginterfaceforplantbreedingapplications AT simonreinhard brapianapplicationprogramminginterfaceforplantbreedingapplications AT soldevillanahuel brapianapplicationprogramminginterfaceforplantbreedingapplications AT stephengordon brapianapplicationprogramminginterfaceforplantbreedingapplications AT sunqi brapianapplicationprogramminginterfaceforplantbreedingapplications AT tovarclarysabel brapianapplicationprogramminginterfaceforplantbreedingapplications AT uszynskigrzegorz brapianapplicationprogramminginterfaceforplantbreedingapplications AT veroudenmaikel brapianapplicationprogramminginterfaceforplantbreedingapplications |