Resultados de búsqueda - Sequani~

Small RNA Sequencing and Assembly (sRSA): RNA extraction and small RNA library preparation for Illumina sequencing por Fuentes, S., Gutierrez, D., Kreuze, Jan F.

Materias: “…high-throughput sequencing…”
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The Complete Genome Sequence of Citrus Vein Enation Virus (CVEV) Obtained through Deep Sequencing of Small RNAs por Vives, María C., Velázquez, Karelia, Pina, José A., Moreno, Pedro, Guerri, José, Navarro, Luis

“…The gaps between adjacent contigs were filled by RT-PCR amplification, cloning and sequencing in order to obtain the complete genome sequence of a new virus, Citrus vein enation virus (CVEV). …”
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Virus Detection by High-Throughput Sequencing of Small RNAs: Large-Scale Performance Testing of Sequence Analysis Strategies por Massart, Sebastien, Chiumenti, Michela, De-Jonghe, Kris, Glover, Rachel, Haegeman, Annelies, Koloniuk, Igor, Kominek, Petr, Kreuze, Jan, Kutnjak, Denis, Lotos, Leonidas, Maclot, Francois, Maliogka, Varvara, Maree, Hans J., Olivier, Thibaut, Olmos, Antonio, Pooggin, Mikhail M., Reynard, Jean-Sebastien, Ruiz-García, Ana B., Safarova, Dana, Schneeberger, Pierre H., Sela, Noa, Turco, Silvia, Vainio, Eeva J., Varallyay, Eva, Verdin, Eric, Westenberg, Marcel, Brostaux, Yves, Candresse, Thierry

“…Recent developments in high-throughput sequencing (HTS), also called next-generation sequencing (NGS), technologies and bioinformatics have drastically changed research on viral pathogens and spurred growing interest in the field of virus diagnostics. …”
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Access to ultra-long IgG CDRH3 bovine antibody sequences using short read sequencing technology por Oyola, Samuel O., Henson, Sonal P., Nzau, B., Kibwana, E., Nene, Vishvanath M.

“…Although this technology has worked well in sequencing Ig V-D-J regions of most jawed vertebrates, it has faced serious technical challenges with sequencing regions in bovine Ig bearing ultra-long CDRH3 sequences, which are longer than 120 bp. …”
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Genomic prediction of kernel zinc concentration in multiple maize populations using genotyping-by-sequencing and repeat amplification sequencing markers por Guo, Rui, Dhliwayo, Thanda, Mageto, Edna K., Palacios-Rojas, Natalia, Lee, Michael

“…In the present study, an association-mapping panel and two maize double-haploid (DH) populations, both genotyped with genotyping-by-sequencing (GBS) and repeat amplification sequencing (rAmpSeq) markers, were used to estimate the genomic prediction accuracy of kernel Zn concentration in maize. …”
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Genomic resources for water yam (Dioscorea alata L.): analyses of EST sequences, De Novo sequencing and GBS libraries por Saski, C.A., Bhattacharjee, Ranjana, Scheffler, Brian E., Asiedu, Robert

“…In the present study, several methods including expressed sequence tags (EST)-sequencing, de novo sequencing, and genotyping-by-sequencing (GBS) profiles on two yam (Dioscorea alata L.) genotypes (TDa 95/00328 and TDa 95-310) was performed to generate genomic resources for use in its improvement programs. …”
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A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses por Bömer, M., Turaki, A.A., Silva, G., Kumar, P. Lava, Seal, S.E.

“…Further characterisation of DBV species is necessary to determine which represent episomal viruses and which are only present as integrated badnavirus sequences in some yam genomes. In this study, a sequence-independent multiply-primed rolling circle amplification (RCA) method was evaluated for selective amplification of episomal DBV genomes. …”
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Next-Generation Sequencing Reveals the First Complete Genome Sequence of Cowpea aphid-borne mosaic virus from Uganda por Mbeyagala, E.K., Tukamuhabwe, Phineas, Bisikwa, J., Holton, T., Mukasa, S.B.

“…We present here the first complete genome sequence of Cowpea aphid-borne mosaic virus (CABMV) isolated from cowpea in Uganda and compare it with five CABMV complete genome sequences from Brazil (2), India (2), and Zimbabwe (1). …”
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Establishment of sequencing and bioinformatics protocols for pathogen identification por Jimenez, Jenyfer, Gil Ordoñez, Alejandra, Alvarez-Quinto, Robert, Mollov, DImitre, Leival, Ana Maria, Cuéllar, Wilmer Jose

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The logic of adaptive sequential experimentation in policy design por Xing, Haipeng, Zhang, Xiaobo

“…We develop a theoretical model to show the logic of adaptive sequential experiment design in the presence of uncertainty over negative effects and discuss how to choose samples in a population to minimize the experiment cost. …”
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Genetic algorithms for the sequential irrigation scheduling problem por Anwar, Arif A., Haq, Z. U.

“…A sequential irrigation scheduling problem is the problem of preparing a schedule to sequentially service a set of water users. …”
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Using genotyping-by-sequencing to understand Musa diversity por Chan, A., Perrier, Xavier, Jenny, C., Jacquemoud-Collet, J.P., Rouard, M., Sardos, J., Roux, N., Town, C.D.

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Genome sequence and analysis of the tuber crop potato por Xu, X., Pan, P., Cheng, S., Zhang, B., Mu, D., Ni, P., Zhang, G., Yang, S., Li, R., Wang, S., Orjeda, G., Guzmán, F., Torres, M., Lozano, R., Ponce, O., Martínez, D., Cruz, G. de la, Chakrabarti, S.K., Patil, V.U., Skryabin, K.G., Kuznetsov, B.B., Ravin, N.V., Kolganova, T.V., Beletsky, A.V., Mardanov, A.V., Genova, A.D., Bolser, D.M., Martin, D.M.A., Li, G., Yang, Y., Kuang, H., Hu, Q., Xiong, X., Bishop, G.J., Sagredo, B., Mejia, N., Zagorski, W., Gromadka, R., Gawor, J., Szczesny, P., Huang, S., Zhang, Z., Liang, C., He, J., Li, Y., He, Y., Xu, J., Zhang Yanyan, Xie, B., Du, Y., Qu, D., Bonierbale, Merideth W., Ghislain, M., Herrera, M.R., Giuliano, G., Pietrella, M., Perrotta, G., Facella, P., O'Brien, K., Feingold, S.E., Barreiro, L.E., Massa, G.A., Diambra, L., Whitty, B.R., Vaillancourt, B., Lin, H., Massa, A.N., Geoffroy, M., Lundback, S., DellaPenna, D., Buell, R., Sharma, S.K., Marshall, D.F., Waugh, R., Bryan, Glenn J., Destefanis, M., Nagy, I., Milbourne, D., Thomson, S.J., Fiers, M., Jacobs, J.M.E., Nielsen, K.L., Sonderkaer, M., Iovene, M., Torres, G.A., Jiang, J., Veilleux, R.E., Bachem, C.W.B., Boer, J. de., Borm, T., Kloosterman, B., Eck, H. van., Datema, E., Lintel Hekkert, B. te., Goverse, A., Ham, R.C.H.J. van., Visser, Richard G.F.

“…Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. …”
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NGSEP (Next Generation Sequencing Eclipse Plugin) por Cruz, Daniel Felipe, Hoz, Juan Fernando de la, Perea, Claudia Samantha, Quintero, Juan Camilo, Duitama, Jorge

“…NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. …”
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Sequential irrigation scheduling avoiding night irrigation por Anwar, Arif A., Vries, T.T. de

“…The sequential irrigation scheduling problem is one where a set of irrigation jobs have to be scheduled sequentially. …”
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Sequencing swine leucocyte alleles for vaccine development por Steinaa, Lucilla, Henson, Sonal P., Buus, Soren, Stryhn, Annette, Nielsen, Morten, Svitek, Nicholas, Onzere, Cynthia K., Nyambego, Edwina B., Ndambuki, Gideon M., Bishop, Richard P.

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Redefining the medicago sativa alphapartitiviruses genome sequences por Bejerman, Nicolas Esteban, Debat, Humberto Julio, Nome Docampo, Claudia, Cabrera Mederos, Dariel, Trucco, Veronica Milagros, De Breuil, Soledad, Lenardon, Sergio Luis, Giolitti, Fabian

“…Furthermore, four assembled sequences (contigs) analyzed by BlastX searches shared significant identity (E-value = 0), to the capsid and replication associated proteins encoded by alphapartitiviruses.…”
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Escaneo científico y tecnológico Genotyping by sequencing por Flórez Martínez, Diego Hernando

“…El objetivo de este ejercicio de inteligencia estratégica para la I+D+i, se enfoca en la identificación a través de un escaneo científico y un escaneo tecnológico del estado actual de uso con fines de investigación y comercialización de la técnica de genotipado por secuenciación (Genotyping by Sequencing – GBS) tanto en publicación científicas en la base de consulta de Scopus®, cómo en las patentes nacionales e internacionales a través de la herramienta PatentInspiration®.…”
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Utvärdering av Equanimity som lugnande medel por Gunnarsson, Ellica

“…Ceva’s goal is to see if there is a decrease in the nervous behaviour in stressed situations when using Equanimity, so that they can market Equanimity as a gel with a calming effect on horse in stressful situations. …”

Transcriptome Sequencing Reveals a Complete Genome Sequence of Cowpea Aphid-Borne Mosaic Virus from Passion Fruit in Kenya por Munguti, F., Maina, S., Nyaboga, E.N., Kilalo, D., Kimani, E., Macharia, M., Holton, T.A.

“…Analysis of transcriptome sequencing (RNA-Seq) data revealed a complete Cowpea aphid-borne mosaic virus (CABMV) genome from virus-infected passion fruit in Kenya. …”
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