Search Results - Cold Spring Harbor Laboratory

Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome by Slabaugh, Erin, Desai, Jigar S., Sartor, Ryan C., Lawas, Lovely Mae F., Jagadish, Krishna S.V., Doherty, Colleen J.

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Natural variation of OsLG3 controls drought stress tolerance in rice by inducing ros scavenging by Xiong, Haiyan, Yu, Jianping, Li, Jinjie, Wang, Xin, Liu, Pengli, Zhang, Hongliang, Zhao, Yan, Yin, Zhigang, Li, Yang, Guo, Yan, Fu, Binying, Wang, Wensheng, Li, Zhikang, Ali, Jauhar, Li, Zichao

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Wide sampling of natural diversity identifies novel molecular signatures of C4 by Kelly, Steven, Covshoff, Sarah, Wanchana, Samart, Thakur, Vivek, Quick, W. Paul, Wang, Yu, Ludwig, Martha, Bruskiewich, Richard, Fernie, Alisdair R., Sage, Rowan F., Tian, Zhijian, Yan, Zixian, Wang, Jun, Zhang, Yong, Zhu, Xinguang, Ka-Shu Wong, Gane, Hibberd, Julian M.

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Improving gene regulatory network inference by incorporating rates of transcriptional change by Desai, Jigar S., Sartor, Ryan C., Lawas, Lovely Mae, Jagadish, Krishna S.V., Doherty, Colleen J.

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Environmental gene regulatory influence networks in rice (Oryza sativa): response to water deficit, high temperature and agricultural environments by Wilkins, Olivia, Hafemeister, Christoph, Plessis, Anne, Holloway-Phillips, Meisha-Marika, Pham, Gina M., Nicotra, Adrienne B., Gregorio, Glenn B., Jagadish, Krishna S.V., Septiningsih, Endang M., Bonneau, Richard, Purugganan, Michael

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Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. by Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., Antonio, Baltazar A., Aono, Hideo, Apweiler, Rolf, Bruskiewich, Richard, Bureau, Thomas, Burr, Frances, Costa de Oliveira, Antonio, Fuks, Galina, Habara, Takuya, Haberer, Georg, Han, Bin, Harada, Erimi, Hiraki, Aiko T., Hirochika, Hirohiko, Hoen, Douglas, Hokari, Hiroki, Hosokawa, Satomi, Hsing, Yue, Ikawa, Hiroshi, Ikeo, Kazuho, Imanishi, Tadashi, Ito, Yukiyo, Jaiswal, Pankaj, Kanno, Masako, Kawahara, Yoshihiro, Kawamura, Toshiyuki, Kawashima, Hiroaki, Khurana, Jitendra P., Kikuchi, Shoshi, Komatsu, Setsuko, Koyanagi, Kanako O., Kubooka, Hiromi, Lieberherr, Damien, Lin, Yao-Cheng, Lonsdale, David, Matsumoto, Takashi, Matsuya, Akihiro, McCombie, W. Richard, Messing, Joachim, Miyao, Akio, Mulder, Nicola, Nagamura, Yoshiaki, Nam, Jongmin, Namiki, Nobukazu, Numa, Hisataka, Nurimoto, Shin, O’Donovan, Claire, Ohyanagi, Hajime, Okido, Toshihisa, OOta, Satoshi, Osato, Naoki, Palmer, Lance E., Quetier, Francis, Raghuvanshi, Saurabh, Saichi, Naomi, Sakai, Hiroaki, Sakai, Yasumichi, Sakata, Katsumi, Sakurai, Tetsuya, Sato, Fumihiko, Sato, Yoshiharu, Schoof, Heiko, Seki, Motoaki, Shibata, Michie, Shimizu, Yuji, Shinozaki, Kazuo, Shinso, Yuji, Singh, Nagendra K., Smith-White, Brian, Takeda, Jun-ichi, Tanino, Motohiko, Tatusova, Tatiana, Thongjuea, Supat, Todokoro, Fusano, Tsugane, Mika, Tyagi, Akhilesh K., Vanavichit, Apichart, Wang, Aihui, Wing, Rod A., Yamaguchi, Kaori, Yamamoto, Mayu, Yamamoto, Naoyuki, Yu, Yeisoo, Zhang, Hao, Zhao, Qiang, Higo, Kenichi, Burr, Benjamin, Gojobori, Takashi, Sasaki, Takuji

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Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice by Piegu, Benoit, Guyot, Romain, Picault, Nathalie, Roulin, Anne, Saniyal, Abhijit, Kim, Hyeran, Collura, Kristi, Brar, Darshan S., Jackson, Scott, Wing, Rod A., Panaud, Olivier

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Promoter mutations of an essential gene for pollen development result in disease resistance in rice by Chu, Zhaohui, Yuan, Meng, Yao, Jialing, Ge, Xiaojia, Yuan, Bin, Xu, Caiguo, Li, Xianghua, Fu, Binying, Li, Zhikang, Bennetzen, Jeffrey L., Zhang, Qifa, Wang, Shiping

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The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus... by Ammiraju, Jetty S.S., Luo, Meizhong, Goicoechea, José L., Wang, Wenming, Kudrna, Dave, Mueller, Christopher, Talag, Jayson, Kim, HyeRan, Sisneros, Nicholas B., Blackmon, Barbara, Fang, Eric, Tomkins, Jeffery B., Brar, Darshan, Mackill, David, McCouch, Susan, Kurata, Nori, Lambert, Georgina, Galbraith, David W., Arumuganathan, K., Rao, Kiran, Walling, Jason G., Gill, Navdeep, Yu, Yeisoo, SanMiguel, Phillip, Soderlund, Carol, Jackson, Scott, Wing, Rod A.

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A simple age-structured, temperature-dependent population growth model of brown rice hopper (Nilaparvata lugens (Stal)) by Wei, Xiaojing, Balanza, Jane Girly, Ngoc, Vu Thi Bich, Giles, James Edward, Swaans, Cornelis

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Epitope specificity of bovine immune responses to the major surface antigen of Theileria parva sporozoites by Musoke, A.J., Nene, Vishvanath M., McKeever, Declan J.

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Molecular characterization of a Theileria parva surface sporozoite antigen by Nene, Vishvanath M., Iams, K.P., Musoke, A.J.

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True yams (Dioscorea): a biological and evolutionary link between eudicots and grasses by Mignouna, Hodeba D., Abang, Mathew M., Asiedu, Robert, Geeta, R.

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Producing yam (Dioscorea) seeds through controlled crosses by Mignouna, Hodeba D., Abang, Mathew M., Asiedu, Robert, Geeta, R.

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Yam (Dioscorea) husbandry: cultivating yams in the field or greenhouse by Mignouna, Hodeba D., Abang, Mathew M., Asiedu, Robert, Geeta, R.

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Culturing meristematic tissue and node cuttings from yams (Dioscorea) by Mignouna, Hodeba D., Abang, Mathew M., Asiedu, Robert, Geeta, R.

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Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals by Böhme, U., Otto, T.D., Cotton, J.A., Steinbiss, S., Sanders, M., Oyola, Samuel O., Nicot, A., Gandon, S., Patra, K.P., Herd, C., Bushell, E., Modrzynska, K.K., Billker, O., Vinetz, J.M., Rivero, A., Newbold, C.J., Berriman, M.

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Distribution and asymptotic behavior of the phylogenetic transfer distance by Felipe, M.D., Domelevo Entfellner, Jean-Baka, Lemoine, F., Truszkowski, J., Gascuel, O.

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Variant antigen repertoires in Trypanosoma congolense populations and experimental infections can be profiled from deep sequence data using universal protein motifs by Silva Pereira, S., Casas-Sánchez, A., Haines, L.R., Ogugo, Moses W., Kihara, Absolomon, Sanders, M., Kemp, Stephen J., Acosta-Serrano, Á., Noyes, H., Berriman, M., Jackson, A.P.

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Cell size regulation and proliferation fluctuations in single-cell derived colonies by Nieto, César, Vargas García, César, Pedraza, Juan Manuel, Singh, Abhyudai

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