Search Results - "proteomes"

Innovative tools for detection of plant pathogenic viruses and bacteria by López, María M., Bertolini, Edson, Olmos, Antonio, Caruso, Paola, Gorris, María T., Llop, Pablo, Penyalver, Ramón, Cambra, Mariano

“…The advances in research that will result from the sequencing of many plant pathogen genomes, especially now in the era of proteomics, represent a new source of information for the future development of sensitive and specific detection techniques for these microorganisms.…”
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Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases by Staton, Margaret, Cannon, Ethalinda K.S., Sanderson, Lacey-Anne, Wegrzyn, Jill, Anderson, Tavis, Buehler, Sean, Cobo-Simón, Irene, Faaberg, Kay, Grau, Emily, Guignon, Valentin, Gunoskey, Jessica, Inderski, Blake, Jung, Sook, Lager, Kelly, Main, Dorrie, Poelchau, Monica F., Ramnath, Risharde, Richter, Peter, West, Joe, Ficklin, Stephen

“…With increasing volumes, complexity and the need to integrate genomic, transcriptomic, metabolomic, proteomic, phenomic and environmental data, community databases face tremendous challenges in ongoing maintenance, expansion and upgrades. …”
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Analysis of genetic diversity of banana weevils (Cosmopolites sordidus) (Coleoptera: Curculionidae) using tanscriptome-derived simple sequence repeat markers by Milton, Ali, Muhanguzi, Dennis, Male, Allan, Kajubi, Ali, Buah, Stephen, Kubiriba, Jerome, Tumuhimbise, Robooni

“…Advances in genomics, proteomics, and sequencing technologies have provided powerful pathways to genotyping disastrous pests such as C. sordidus. …”
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Genes transcribed in the salivary glands of female Rhipicephalus appendiculatus ticks infected with Theileria parva by Nene, Vishvanath M., Lee, D., Kang'a, S., Skilton, Robert A., Shah, Tushaar, Villiers, Etienne P. de, Mwaura, S., Taylor, D., Quackenbush, J., Bishop, Richard P.

“…The EST data will be a useful resource for construction of microarrays to probe vector biology, vector–host and vector–pathogen interactions and to underpin gene identification via proteomics approaches.…”
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Planteome: A resource for common reference ontologies and applications for plant biology by Jaiswal, P., Cooper, Laurel D., Elser, J.L., Meier, A., Laporte, Marie-Angélique, Mungall, C., Smith, B., Johnson, E.K.S., Seymour, M., Preece, J., Xu, X., Kitchen, R.S., Qu, B., Zhang, E., Arnaud, Elizabeth, Carbon, S., Todorovic, S., Stevenson, D.W.

“…Linking these analyses to the growing corpus of genomics data generated by high-throughput sequencing, transcriptomics, proteomics, phenomics and genome annotation projects requires common, interoperable, reference vocabularies (ontologies) for the description of the data. …”
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Stress response and detoxification mechanisms involved in non-target-site herbicide resistance in sunflower by Vega, Tatiana, Gil, Mercedes, Martin, Gabriela, Moschen, Sebastian Nicolas, Picardi, Liliana, Nestares, Graciela

“…Roots were collected, and label-free quantitation (LFQ) proteomic analysis was carried out to characterize the NTSR mechanisms involved in the IMI resistance trait in sunflower. …”
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Proteins Related to Stress and Redox State of 'Moncada' Mandarin Leaves with Contrasting Fruit Load by Munoz-Fambuena, Natalia, Mesejo, Carlos, Agustí, Manuel, Tarraga, Susana, Iglesias, Domingo J., Primo-Millo, Eduardo, González-Mas, María C.

“…A proteomic study was used to know more about the Citrus redox state and stress response related to fruit load. …”
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A USA Africa collaborative strategy for identifying, characterising and developing maize germplasm with resistance to aflatoxin contamination by Menkir, A., Brown, R.L., Bandyopadhyay, Ranajit, Chen, Z.Y., Cleveland, T.E.

“…These pairs of lines are currently being used for proteome analysis to identify resistance-associated proteins and the corresponding genes underlying resistance to aflatoxin accumulation. …”
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Gut-expressed vitellogenin facilitates the movement of a plant virus across the midgut wall in its insect vector by He, Ya-Zhou, Wang, Yu-Meng, Yin, Tian-Yan, Cuéllar, Wilmer Jose, Liu, Shu-Sheng, Wang, Xiao-Wei

“…Here, in order to identify whitefly midgut proteins that interact with a devastating begomovirus, tomato yellow leaf curl virus (TYLCV), we performed midgut-specific TYLCV coat protein (CP) immunoprecipitation followed by high-throughput mass spectrometry proteomic analysis. We find that vitellogenin (Vg), a critical insect reproductive protein that has been considered to be synthesized by the fat body, is also synthesized by and interacts with TYLCV CP in the whitefly midgut. …”
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Harnessing multi-country cooperations, initiatives, facilities, and technologies for advancing livestock genetic improvement in Africa by Mapholi, N.O., Banga, C., Mrode, Raphael A., Opoola, O., Houaga, I., Nesengani, L.T., Ibeagha-Awemu, E.M.

“…This chapter draws attention to multi-country initiatives and benefits for performance recording as well as success stories in Africa (Sect. 29.2), the benefits of data sharing (Sect. 29.3), the role and importance of core facilities, especially those associated with the technologies of genomics, proteomics, metabolomics, metagenomics, and statistical/bioinformatics management of data (Sect. 29.4), germplasm centers for the storage of genetic materials or seed stock (Sect. 29.5), and the important place and prospect of multi-country genetic evaluations and practical application in Africa (Sects. 29.6 and 29.7). …”
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Bridging Genes and Sensory Characteristics in Legumes: Multi-Omics for Sensory Trait Improvement by Sharma, Niharika, Mukhopadhyay, Soumi Paul, Onkarappa, Dhanyakumar, Yogendra, Kalenahalli, Ratanpaul, Vishal

“…By integrating data from genomics, transcriptomics, proteomics and metabolomics, the genetic and biochemical networks that directly dictate sensory perception can be comprehensively unveiled. …”
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Breeding aflatoxinresistant maize lines using recent advances in technologies a review by Brown, R., Menkir, A., Chen, Z., Bhatnagar, D., Yu, J., Yao, H., Cleveland, T.

“…With the new tools of proteomics and genomics, identification of resistance mechanisms, and rapid resistance marker selection methodologies, there is an increasing possibility of finding significant resistance in corn, and in understanding the mechanism of this resistance.…”
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Non-additive gene regulation in a citrus allotetraploid somatic hybrid between C. reticulata Blanco and C. limon (L.) Burm by Bassene, Jean Baptiste, Froelicher, Yann, Dubois, C., Ferrer, Rosa M., Navarro, Luis, Ollitrault, Patrick, Ancillo, Gema

“…These results suggest there is a global dominance of the mandarin transcriptome, in consistence with our previous studies on aromatic compounds and proteomics. Interspecific differentiation of gene expression and non-additive gene regulation involved various biological pathways and different cellular components.…”
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An alfalfa MYB‐like transcriptional factor MsMYBH positively regulates alfalfa seedling drought resistance and undergoes MsWAV3‐mediated degradation by Kun Shi, Jia Liu, Huan Liang, Hongbin Dong, Jinli Zhang, Yuanhong Wei, Le Zhou, Shaopeng Wang, Jiahao Zhu, Mingshu Cao, Jones, Christopher S., Dongmei Ma, Zan Wang

“…Compared with the wild-types, the biomass and forage quality were enhanced in MsMYBH overexpressed plants. Combined RNA-seq, proteomics and chromatin immunoprecipitation analysis showed that MsMYBH can directly bind to the promoters of MsMCP1, MsMCP2, MsPRX1A and MsCARCAB to improve their expression. …”
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Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage by Bishop, Richard P., Shah, Tushaar, Pelle, Roger, Hoyle, D., Pearson, T., Haines, L., Brass, A., Hulme, H., Graham, S.P., Taracha, E.L.N., Lu, C., Hass, B., Wortman, Jennifer R., White, O., Gardner, M.J., Nene, Vishvanath M., Villiers, Etienne P. de

“…There was concordance between transcription and protein expression for heat shock proteins that were very highly expressed according to MPSS and proteomics. The data suggests a low level of baseline transcription from the majority of protein-coding genes.…”
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Pathogenesis and immunobiology of brucellosis : review of brucella-host interactions by de Figueiredo, Paul, Ficht, Thomas A., Rice-Ficht, Allison C., Rossetti, Carlos Alberto, Adams, Leslie G.

“…Data sets of next-generation sequences of Brucella and host time-series global expression fused with proteomics and metabolomics data from in vitro and in vivo experiments now inform interactive cellular pathways and gene regulatory networks enabling full-scale systems biology analysis. …”
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Identification of novel vaccine candidates against cryptosporidiosis of neonatal bovines by reverse vaccinology by Tomazic, Mariela Luján, Rodriguez, Anabel Elisa, Lombardelli Joaquín Andrés, Poklepovich Caride, Tomás Javier, Garro, Carlos Javier, Galarza, Roxana Ivon, Tiranti, Karina, Florin-Christensen, Mónica, Schnittger, Leonhard

“…A reverse vaccinology approach was employed to (i) identify the GPI-anchored proteome of C. parvum using available web-based bioinformatic tools and (ii) characterize previously unrecognized novel vaccine antigens. …”
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Next-generation biological control: the need for integrating genetics and genomics by Leung, Kelley, Ras, Erica, Ferguson, Kim B., Arïens, Simone, Babendreier, Dirk, Bijma, Piter, Bourtzis, Kostas, Brodeur, Jacques, Bruins, Margreet A., Centurión, Alejandra, Chattington, Sophie R., Chinchilla-Ramírez, Milena, Dicke, Marcel, Fatouros, Nina E., González-Cabrera, Joel, Groot, Thomas V. M., Haye, Tim, Knapp, Marcus, Koskinioti, Panagiota, Le Hesran, Sophie, Lyrakis, Manolis, Paspati, Angeliki, Pérez-Hedo, Mertixell, Plouvier, Wouter N., Schlötterer, Christian, Stahl, Judith M., Thiel, Andra, Urbaneja, Alberto, Van-De-Zande, Louis, Verhulst, Eveline C., Vet, Louise E. M., Visser, Sander, Werren, John H., Xia, Shuwen, Zwaan, Bas J., Magalhaes, Sara, Beukeboom, Leo W., Pannebakker, Bart A.

“…Gene discovery involves quantitative trait loci analyses, transcriptomic and proteomic studies, and gene editing. Improving biocontrol practices includes marker‐assisted selection, genomic selection and microbiome manipulation of biocontrol agents, and monitoring for genetic variation during rearing and post‐release. …”
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Insights into microbially induced salt tolerance and endurance mechanisms (stem) in plants by Kaushal, M.

“…Molecular research in MI plants under salt stress conditions has found variations in the expression profiles of genes such as HKT1, NHX, and SOS1 (ion transporters), PIPs and TIPs (aquaporins), RBCS, RBCL (RuBisCo subunits), Lipoxygenase2 [jasmonic acid (JA) signaling], ABA (abscisic acid)-responsive gene, and APX, CAT, and POD (involved in antioxidant defense). Proteomic analysis in arbuscular mycorrhizal fungi-inoculated plants revealed upregulated expression of signal transduction proteins, including Ca2+ transporter ATPase, calcium-dependent protein kinase, calmodulin, and energy-related proteins (NADH dehydrogenase, iron-sulfur protein NADH dehydrogenase, cytochrome C oxidase, and ATP synthase). …”
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Designing bovine T cell vaccines via reverse immunology by Nene, Vishvanath M., Svitek, Nicholas, Toye, Philip G., Golde, W.T., Barlow, J., Buus, Soren, Nielsen, Morten

“…When retrained, NetMHCpan may be used to predict parasite peptide epitopes by scanning the predicted T. parva proteome and known parasite CTL antigens. A range of pMHC tetramers, made “on-demand”, will then be used to assay cattle that are immune to ECF or in vaccine trials to determine if CTLs of the predicted epitope specificity are present or not. …”
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