Search Results - "ontology"

Desarrollo de ontologias para papas, mejoradas. by Hualla, V., Gómez, R., Salas, A., Córdova, R., Haan, Stef de, Bonierbale, Merideth W., Simon, R.

Subjects: “…ontology…”
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Cassavabase (cassavabase.org): an integrated field breeding and genomics database enables accelerated genetic gain in cassava by Agbona, A., Kulakow, Peter A., Rabbi, Ismail Y., Prasad, P., Arnaud, Elizabeth, Valette, L., Angelique, M., Mueller, L., Menda, N.

Subjects: “…ontology…”
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Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium by Clarke, Jennifer L., Cooper, Laurel D., Poelchau, Monica F., Berardini, Tanya Z., Elser, Justin, Farmer, Andrew D., Ficklin, Stephen, Kumari, Sunita, Laporte, Marie-Angélique, Nelson, Rex T., Sadohara, Rie, Selby, Peter, Thessen, Anne E., Whitehead, Brandon, Sen, Taner Z.

Subjects: “…standard ontologies…”
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Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature by Shrestha, Rosemary, Arnaud, Elizabeth, Mauleon, Ramil, Senger, Martin, Davenport, Guy F., Hancock, David, Morrison, Norman, Bruskiewich, Richard, McLaren, Graham

“…Conclusions The controlled vocabularies of the CO are being used to curate several CGIAR centres' agronomic databases. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases will be important steps in comparative phenotypic and genotypic studies across species and gene-discovery experiments…”
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Decoding the Data Ecosystem: CGIAR Platform for Big Data in Agriculture 2018 Convention Report by CGIAR Platform for Big Data in Agriculture

Subjects: “…ontology…”
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Comparative transcriptome and expression profiling of resistant and susceptible banana cultivars during infection by Fusarium oxysporum by Kaushal, M., Mahuku, George S., Swennen, Rony L.

Subjects: “…ontology…”
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Data dictionary template for research dataset by Ghazali, Saadiah, Roslan, Shazleen

Subjects: “…ontology…”
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Developing data interoperability using standards: A wheat community use case by Dzale-Yeumo, E., Alaux, M., Arnaud, Elizabeth, Aubin, S., Baumann, U., Buche, P., Cooper, Laurel D., Cwiek-Kupczynska, H., Davey, R.P., Fulss, R.A., Jonquet, C., Laporte, Marie-Angélique, Larmande, Pierre, Pommier, C., Protonotarios, V., Reverte, C., Shrestha, R., Subirats, I., Venkatesan, A., Whan, A., Quesneville, H.

Subjects: “…ontology…”
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The crop ontology. A referenced controlled vocabulary on crop trait information for maize, wheat, chickpea, sorghum, Musa, potato and rice. by Shrestha, R., Mauleon, R, Simon, R., Balaji, J., Butterfield, M., Channelière, S., Alercia, A., Senger, M., Manansala, K., Metz, T., Davenport, G., Bruskiewich, R., McLaren, G., Arnaud, Elizabeth

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Editorial: Knowledge graph technologies: the next frontier of the food, agriculture, and water domains by Roussey, Catherine, Guéret, Christophe, Laporte, Marie-Angelique

Subjects: “…ontologies…”
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Towards a thesaurus of plant characteristics: an ecological contribution by Garnier, E., Stahl, U., Laporte, Marie-Angélique, Kattge, J., Mougenot, I., Kuhn, I., Laporte, B., Amiaud, B., Ahrestani, F.S., Bonisch, G., Bunker, D.E., Cornelissen, J.H.C., Díaz, S., Enquist, B.J., Gachet, S., Jaureguiberry, P., Kleyer, M., Lavorel, S., Maicher, L., Pérez Harguindeguy, N., Poorter, H., Schildhauer, M., Shipley, B., Violle, C., Weiher, E., Wirth, C., Wright, I.J., Klotz, S.

Subjects: “…ontology…”
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Trait Dictionary Quality Control Tool version 1.0 and Documentation by Hazekamp, Thomas

Subjects: “…ontology…”
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Commoning social-ecological networks through the lens of relational ontologies and other economies: how ecologists can diversify their notions of human-non-human relationships by Astegiano, Julia, Andrieu, Jimena, Wajner, Matias, Marquez, Victoria, Torrico Chalabe, Julieta Karina, Massol, François, Calviño, Ana, Zamudio, Fernando, Saur Palmieri, Valentina

“…In this vein, we introduce two frameworks related with the production of the common, relational ontologies and other economies, and present two examples applying them. …”
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In the hands of the next generation farmers : a study of farm succession in Västmanland by Almgren, Rebecca

Subjects: “…ontological security…”

Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy by Venkatesan, A., Tagny Ngompe, G., El Hassouni, N., Chentli, I., Guignon, Valentin, Jonquet, C., Ruíz, M., Larmande, Pierre

Subjects: “…ontology…”
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Cassava Breeding Program Data Management: Year-end Meeting. Barranquilla, 17 October 2022 by Pino Duran, Lizbeth

Subjects: “…ontologies…”
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Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping by Luro, Francois, Constantino, Gilles, Terol, Javier, Argout, Xavier, Allario, Thierry, Wincker, Patrick, Talón, Manuel, Ollitrault, Patrick, Morillon, Raphael

Subjects: “…Gene Ontology…”
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RicePilaf: a post-GWAS/QTL dashboard to integrate pangenomic, coexpression, regulatory, epigenomic, ontology, pathway, and text-mining information to provide functional insights into rice QTLs and GWAS loci by Shrestha, Anish M. S., Gonzales, Mark Edward M., Ong, Phoebe Clare L., Larmande, Pierre, Lee, Hyun-Sook, Jeung, Ji-Ung, Kohli, Ajay, Chebotarov, Dmytro, Mauleon, Ramil P., Lee, Jae-Sung, McNally, Kenneth L.

“…In particular, it integrates (i) pangenomic information from high-quality genome builds of multiple rice varieties, (ii) coexpression information from genome-scale coexpression networks, (iii) ontology and pathway information, (iv) regulatory information from rice transcription factor databases, (v) epigenomic information from multiple high-throughput epigenetic experiments, and (vi) text-mining information extracted from scientific abstracts linking genes and traits. …”
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Genetically Based Location from Triploid Populations and Gene Ontology of a 3.3-Mb Genome Region Linked to Alternaria Brown Spot Resistance in Citrus Reveal Clusters of Resistance Genes by Cuenca, José, Aleza, Pablo, Vicent, Antonio, Brunel, Dominique, Ollitrault, Patrick, Navarro, Luis

“…Clusters of resistance genes were identified by gene ontology analysis of this genomic region. Some of these genes are good candidates to control the dominant susceptibility to the ACT-toxin. …”
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Desarrollo de una metodología de extracción de conocimientos a partir de datos de micromatrices de DNA basada en ontologías genéticas by Taie, Armando

Subjects: “…Ontology…”
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