Search Results - "genome sequencing"

Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses by Bejerman, Nicolas Esteban, Giolitti, Fabian, De Breuil, Soledad, Trucco, Veronica Milagros, Nome Docampo, Claudia, Lenardon, Sergio Luis, Dietzgen, Ralf Georg

“…We have determined the full-length 14,491-nucleotide genome sequence of a new plant rhabdovirus, alfalfa dwarf virus (ADV). …”
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Complete genome sequence of a divergent strain of Tibetan frog hepatitis B virus associated with a concave‑eared torrent frog (Odorrana tormota) by Debat, Humberto Julio, Fei Fan Ng, Terry

“…TFHBV-Ot shared a genomic organization and 76.6% overall genome sequence nucleotide identity with the prototype TFHBV associated with N. parkeri (TFHBV-Np). …”
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Draft Genome Sequence of " Candidatus Phytoplasma pruni" (X-Disease Group, Subgroup 16SrIII-B) Strain ChTDIII from Argentina by Fernandez, Franco Daniel, Zübert, Christina, Huettel, Bruno, Kube, Michael, Conci, Luis Rogelio

“…Herein, we report the draft genome sequence of “Candidatus Phytoplasma pruni” strain ChTDIII (subgroup 16SrIII-B). …”
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Full genome sequencing of a divergent isolate of LChV-1 and monitoring of the virus derived siRNAs in sweet cherry over four seasons by Katsiani, Asimina, Olmos, Antonio, Candresse, Thierry, Ruiz-García, Ana B., Katis, Nikolaos, Maliogka, Varvara

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Genome sequence of classical Swine Fever Virus NIVEDI-165, Subtype 1.1, a field virus strain isolated from the southern part of India by Patil, S.S., Suresh, K.P., Amachawadi, R.G., Meekins, D.A., Richt, J.A., Mondal, M., Hiremath, J., Hemadri, D., Rahman, Habibur, Roy, P.

“…To the best of our knowledge, this is the first report on a full-genome sequence of CSFV from South India.…”
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Complete genome sequences of new divergent potato virus X isolates and discrimination between strains in a mixed infection using small RNAs sequencing approach by Kutnjak, Denis, Silvestre, R., Cuéllar, Wilmer Jose, Pérez, W., Muller, G., Ravnikar, Maja, Kreuze, Jan F.

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Genome sequencing reveals a new lineage associated with lablab bean and genetic exchange between Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans by Aritua, Valentine, Harrison, James, Sapp, Melanie, Buruchara, Robin Arani, Smith, Julian, Studholme, David J.

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Stable symbiotic nitrogen fixation under water-deficit field conditions by a stress-tolerant alfalfa microsymbiont and its complete genome sequence : Short communication by Jozefkowicz, Cintia, Brambilla, Silvina Maricel, Frare, Romina Alejandra, Stritzler, Margarita, Piccinetti, Carlos Fabian, Puente, Mariana Laura, Berini, Carolina Andrea, Reyes Perez, Pedro Jose, Soto, Gabriela Cinthia, Ayub, Nicolás Daniel

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Complete Genome Sequences of Six Copper-Resistant Xanthomonas citri pv. citri Strains Causing Asiatic Citrus Canker, Obtained Using Long-Read Technology by Richard, Damien, Boyer, Claudine, Vernière, Christian, Canteros, Blanca Isabel, Lefeuvre, Pierre, Pruvost, Olivier

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Draft Genome Sequences of Dickeya sp. Isolates B16 (NIB Z 2098) and S1 (NIB Z 2099) Causing Soft Rot of Phalaenopsis Orchids by Alic, Spela, Naglic, Tina, Llop, Pablo, Toplak, Natasa, Koren, Simon, Ravnikar, Maja, Dreo, Tanja

“…Here, we report the draft genome sequences of two Dickeya sp. isolates from rotted leaves of Phalaenopsis orchids…”
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Genomic resources for pigeonpea by Odeny, Damaris Achieng, Shah, Tushaar, Saxena, Rachit K.

Subjects: “…genome sequence…”
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Draft genome sequence of multidrug-resistant Citrobacter freundii MTR_GS_V1777 strain isolated from a spinach (Spinacia oleracea) sample in Gazipur, Bangladesh by Islam, Md. Saiful, Pramanik, Pritom Kumar, Rana, Md. Liton, Ramasamy, Srinivasan, Schreinemachers, Papijn, Oliva, Ricardo, Rahman, Md. Tanvir

“…We announce a genome sequence of Citrobacter freundii MTR_GS_V1777 strain isolated from a vegetable sample in Bangladesh. …”
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Complete Genome Sequence of Chlamydia abortus MRI-10/19, Isolated from a Sheep Vaccinated with the Commercial Live C. abortus 1B Vaccine Strain by Livingstone, Morag, Caspe, Sergio Gaston, Longbottom, David

Subjects: “…Genome Sequence…”
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Analyses of Twelve New Whole Genome Sequences of Cassava Brown Streak Viruses and Ugandan Cassava Brown Streak Viruses from East Africa: Diversity, Supercomputing and Evidence for Further Speciation by Ndunguru, Joseph, Sseruwagi, Peter, Tairo, Fred, Stomeo, Francesca, Maina, Solomon, Djikeng, Appolinaire, Kehoe, Monica, Boykin, Laura M.

“…Twelve new whole genomes, including seven of CBSV and five of UCBSV were uncovered in this research, doubling the genomic sequences available in the public domain for these viruses. …”
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Complete genome sequencing and comparative phylogenomics of nine African swine fever virus (ASFV) isolates of the virulent East African p72 genotype IX without viral sequence enrichment by Domelevo Entfellner, Jean-Baka, Okoth, Edward A., Onzere, C.K., Upton, C., Njau, E.P., Höper, D., Henson, Sonal P., Oyola, Samuel O., Bochere, Edwina, Machuka, Eunice M., Bishop, Richard P.

“…We also document genome-level differences between one specific novel Genotype IX genome sequence (KE/2013/Busia.3) and a wild boar cell-passaged derivative. …”
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Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L. by Kim, Sung-Ryul, Ramos, Joie, Ashikari, Motoyuki, Virk, Parminder S., Torres, Edgar A., Nissila, Eero, Hechanova, Sherry Lou, Mauleon, Ramil, Jena, Kshirod K.

“…Six rice cultivars, including three each of donor and recipient lines, respectively, were sequenced by next-generation whole-genome sequencing to detect DNA polymorphisms between the genotypes. …”
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Phylogenomic analysis of Xylella fastidiosa subsp. pauca strains from olive and almond trees in Argentina by Fernandez, Franco Daniel, Arias-Giraldo, L.F., Tolocka, Patricia, Guzman, Fabiana, Olivares García, C., Roca, M.E., Otero, Maria Laura, Conci, Luis Rogelio, Landa, B.B., Haelterman, Raquel Mercedes

Subjects: “…Whole Genome Sequencing…”
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SNP-based genotyping and whole-genome sequencing reveal previously unknown genetic diversity in Xanthomonas vasicola pv. musacearum, causal agent of banana xanthomonas wilt, in its presumed Ethiopian origin by Nakato, Gloria V., Studholme, David J., Blomme, Guy, Grant, Murray, Coutinho, Teresa A., Were, Evans M., Wicker, Emmanuel, Mahuku, George S.

“…Genotyping of 97 isolates and whole-genome sequencing of 15 isolates revealed not only the presence of SL 2 in Ethiopia, but additional diversity beyond SL 1 and SL 2 in four new clades. …”
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The complete genome sequences of a Peruvian and a Colombian isolate of Andean potato latent virus and partial sequences of further isolates suggest the existence of two distinct potato-infecting tymovirus species by Kreuze, Jan F., Koening, R, Souza, J. de, Vetten, H.J., Muller, G, Flores, B., Ziebell, H, Cuéllar, Wilmer Jose

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Analysis of complete genomic sequences of isolates of the sweet potato feathery mottle virus strains C and EA: molecular evidence for two distinct potyvirus species and two P1 protein domains by Untiveros, M., Quispe, D., Kreuze, Jan F.

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