Resultados de búsqueda - "genome sequencing"

Analysis of antimicrobial resistance in non-typhoidal Salmonella collected from pork retail outlets in Vietnam using whole genome sequencing por Holohan, N., Wallat, M., Thi Hai Yen Luu, Clark, E., Duong Thi Quy Truong, Sinh Dang-Xuan, Hue Thi Kim Vu, Dung Van Truong, Hoang Tran Huy, Hung Nguyen-Viet, Unger, Fred, Son Thi Thanh Dang, Stabler, R.A.

“…Phenotypic testing and whole genome sequencing was used to assess the serotype and AMR gene profiles of the 69 NTS isolates. …”
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Chromosome‑level genome sequence of the Genetically Improved Farmed Tilapia (GIFT, Oreochromis niloticus) highlights regions of introgression with O. mossambicus por Etherington, Graham, Nash, Will, Ciezarek, Adam, Mehta, Tarang, Barria, Agustin, Penaloza, Carolina, Khan, MGQ, Durrant, Alex, Forres, Nicole, Fraser, Fiona, Irish, Naomi, Kaithakottil, Gemy, Lipscombe, James, Trinh, Trong, Watkins, Chris, Swarbreck, David, Angiolini, Emily, Cnaani, Avner, Gharbi, Karim, Houston, Ross, Benzie, John, Haerty, Wilfried

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Transcriptome Sequencing Reveals a Complete Genome Sequence of Cowpea Aphid-Borne Mosaic Virus from Passion Fruit in Kenya por Munguti, F., Maina, S., Nyaboga, E.N., Kilalo, D., Kimani, E., Macharia, M., Holton, T.A.

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Draft Genome Sequence of “ Candidatus Phytoplasma oryzae” Strain Mbita1, the Causative Agent of Napier Grass Stunt Disease in Kenya por Fischer, Anne, Santana-Cruz, Ivette, Wambua, Lillian, Olds, Cassandra, Midega, Charles, Dickinson, Matthew, Kawicha, Praphat, Khan, Zeyaur, Masiga, Daniel, Jores, Joerg, Schneider, Bernd

“…In eastern Africa, Napier grass stunt disease causes serious economic losses in the smallholder dairy industry. This draft genome sequence of “ Candidatus Phytoplasma oryzae” strain Mbita1 provides insight into its genomic organization and the molecular basis of pathogenicity.…”
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Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel por Zubair, Saima, Fischer, Anne, Liljander, Anne M., Meens, Jochen, Hegerman, Jan, Gourlé, Hadrien, Bishop, Richard P., Roebbelen, Ina, Younan, Mario, Mustafa, Mudassir Imran, Mushtaq, Mamoona, Bongcam-Rudloff, Erik, Jores, Joerg

“…We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. …”
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Whole genome sequencing of a banana wild relative Musa itinerans provides insights into lineage-specific diversification of the Musa genus por Wu, W., Yang, Y.L., He, W.M., Rouard, M., Li, W.M., Xu, M., Roux, N., Ge, X.J.

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Complete genome sequence of Mycoplasma mycoides subsp. mycoides T1/44, a vaccine strain against contagious bovine pleuropneumonia por Gourgues, G., Barre, A., Beaudoing, E., Weber, J., Magdelenat, G., Barbe, V., Schieck, Elise G., Jores, Joerg, Vashee, S., Blanchard, Alain, Lartigue, C., Sirand-Pugnet, P.

“…We report here the complete genome sequence of the strain T1/44, which is widely used as a live vaccine in Africa.…”
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Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize por Estrada Cañari, Richard, Aragón, Liliana, Pérez Porras, Wendy E., Romero Avila, Yolanda, Martínez Vidal, Gabriel, García, Karina, Cruz Luis, Juancarlos, Arbizu Berrocal, Carlos I.

Materias: “…Genome sequencing…”
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Analysis of the coding-complete genomic sequence of groundnut ringspot virus suggests a common ancestor with tomato chlorotic spot virus por De Breuil, Soledad, Cañizares Sales, Joaquin, Blanca Postigo, Jose Miguel, Bejerman, Nicolas Esteban, Trucco, Veronica Milagros, Giolitti, Fabian, Ziarsolo, Peio, Lenardon, Sergio Luis

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Complete Genome Sequence of Mesorhizobium ciceri Strain R30, a Rhizobium Used as a Commercial Inoculant for Chickpea in Argentina por Foresto, Emiliano, Revale, Santiago, Primo, Emiliano David, Nievas, Fiorela Lujan, Carezzano, Maria Evangelina, Puente, Mariana Laura, Alzari, Pedro, Martínez, Mariano, Ben-Assaya, Mathilde, Mornico, Damien, Santoro, Valeria Maricel, Martínez-Abarca, Francisco, Giordano, Walter, Bogino, Pablo

“…We report the complete genome sequence of Mesorhizobium ciceri strain R30, a rhizobium strain recommended and used as a commercial inoculant for chickpea in Argentina. …”
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Complete genome sequence of deformed wing virus and black queen cell virus isolated from honeybees (Apis mellifera) in Argentina por Gonzalez, Fernanda Noemi, Ferrufino, Cecilia Gabriela, Dus Santos, Maria Jose, Carignano, Hugo Adrian

Materias: “…Complete Genome Sequence…”
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Whole-Genome Sequencing Applied to the Molecular Epidemiology of Shiga Toxin-Producing Escherichia coli O157:H7 in Argentina por Masana, Marcelo Oscar, Carbonari, Claudia Carolina, Fittipaldi, Nahuel, Teatero, Sarah, Athey, Taryn B.T., Pianciola, Luis, Melano, Roberto G., Rivas, Marta, Chinen, Isabel

“…In this work, we report the availability of high-quality draft whole-genome sequences for 19 O157:H7 strains isolated in Argentina.…”
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Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans por Sautua, Francisco José, Gonzalez, Sergio Alberto, Doyle, Vinson P., Berretta, Marcelo Facundo, Gordó, Manuela, Scandiani, María Mercedes, Rivarola, Maximo Lisandro, Fernandez, Paula Del Carmen, Carmona, Marcelo Anibal

“…Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from soybean purple seed collected from San Pedro, Buenos Aires, Argentina, during the 2018 harvest. …”
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Complete Genome Sequence of "Candidatus Portiera aleyrodidarum" BT-QVLC, an Obligate Symbiont That Supplies Amino Acids and Carotenoids to Bemisia tabaci por Santos-Garcia, Diego, Farnier, Pierre-Antoine, Beitia, Francisco J., Zchori-Fein, Einat, Vavre, Fabrice, Mouton, Laurence, Moya, Andres, Latorre, Amparo, Silva, Francisco J.

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Comparative analysis of the chicken IFITM locus by targeted genome sequencing reveals evolution of the locus and positive selection in IFITM1 and IFITM3 por Bassano, I., Swee Hoe Ong, Sanz Hernandez, M., Vinkler, M., Kebede, A., Hanotte, Olivier H., Onuigbo, E., Fife, M., Kellam, P.

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Complete genome sequence of the plant pathogen Ralstonia solanacearum strain ciat-078, isolated in Colombia, obtained using Oxford Nanopore Technology por López Alvarez, Diana, Leiva Sandoval, Ana Maria, Barrantes, Israel, Pardo, Juan Manuel, Dominguez, Viviana, Cuéllar, Wilmer Jose

“…Here, we report the genome sequence of the causal agent, the bacterium Ralstonia solanacearum (Smith) strain CIAT-078, collected in 2004 from affected plantains in central-west Colombia. …”
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Detection of antimicrobial resistance, pathogenicity, and virulence potentials of non-typhoidal Salmonella isolates at the Yaounde abattoir using whole-genome sequencing technique por Matchawe, C., Machuka, Eunice M., Kyallo, Martina M., Bonny, P., Nkeunen, G., Njaci, Isaac, Esemu, S.N., Githae, Dedan, Juma, John, Nfor, B.M., Nsawir, B.J., Piasentier, E., Ndip, L.M., Pelle, Roger

“…Our isolates showed a high degree of pathogenicity and possessed key virulence factors to establish infection even in humans. Whole-genome sequencing unveiled both broader antimicrobial resistance (AMR) profiles and inference of pathogen characteristics. …”
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Draft genome sequence of an enterotoxigenic Escherichia coli strain carrying genes for colonization surface antigen 13 and a heat-labile toxin por Njoroge, Samuel M., Madé, L.F., Mentzer, A. von, Kulohoma, B.W., Kamanu, T.K., Ouko, T.T., Kiiru, J., Ward, M.J., Thomson, N.R., Fèvre, Eric M., Woolhouse, Mark E.J., Kariuki, S.

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Whole Genome Sequence Analysis of Porcine Astroviruses Reveals Novel Genetically Diverse Strains Circulating in East African Smallholder Pig Farms por Amimo, Joshua O., Machuka, Eunice M., Okoth, Edward A., Vlasova, Anastasia N., Pellé, Roger

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Complete genome sequence of the RNAs 3 and 4 segments of Rice stripe virus isolates in Korea and their phylogenetic relationships with Japan and China isolates por Jonson, Miranda Gilda, Choi, Hong-Soo, Kim, Jeong-Soo, Choi, Il-Ryong, Kim, Kook-Hyung

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