Resultados de búsqueda - "genome sequencing"

The genome landscape of Tibetan sheep reveals adaptive introgression from argali and the history of early human settlements on the Qinghai-Tibetan Plateau por Xiao-Ju Hu, Ji Yang, Xing-Long Xie, Feng-Hua Lv, Yin-Hong Cao, Wen-Rong Li, Ming-Jun Liu, Yu-Tao Wang, Jin-Quan Li, Yong-Gang Liu, Yan-Lin Ren, Zhi-Qiang Shen, Han Jianlin, Meng-Hua Li

“…Here, we investigate the genomic variation in Tibetan sheep using whole-genome sequences, single nucleotide polymorphism arrays, mitochondrial DNA, and Y-chromosomal variants in 986 samples throughout their distribution range. …”
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Sequencing of two Sunflower chlorotic mottle virus isolates obtained from different natural hosts shed light on its evolutionary history por Bejerman, Nicolas Esteban, Giolitti, Fabian, De Breuil, Soledad, Lenardon, Sergio Luis

“…To understand SuCMoV evolution and improve the knowledge on its variability, the complete genomic sequences of two SuCMoV isolates collected from Dipsacus fullonum (-dip) and Ibicella lutea (-ibi) were determined from three overlapping cDNA clones and subjected to phylogenetic and recombination analyses. …”
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The molecular characterization of the virus and virus-line agents present in Ta Tao 5 germplasm of Prunus persica por Marini, Diana Beatriz

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SNP mining in C. clementina BAC end sequences; transferability in the Citrus genus (Rutaceae), phylogenetic inferences and perspectives for genetic mapping por Ollitrault, Patrick, Terol, Javier, García-Lor, Andrés, Berard, Aurelie, Chauveau, Aurelie, Froelicher, Yann, Belzile, Caroline, Morillon, Raphael, Navarro, Luis, Brunel, Dominique, Talón, Manuel

“…Background: With the increasing availability of EST databases and whole genome sequences, SNPs have become the most abundant and powerful polymorphic markers. …”
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Cost-Effective and Time-Efficient Molecular Assisted Selection for Ppv Resistance in Apricot Based on ParPMC2 Allele-Specific PCR por Polo-Oltra, Ángela, Romero, Carlos, López, Inmaculada, Badenes, María L., Zuriaga, Elena

“…Moreover, the PMC2 genotype has been determined by PCR or by using whole-genome sequences (WGS) in 175 apricot accessions. These results were complemented with phenotypic and/or genotypic data available in the literature to reach a total of 325 apricot accessions. …”
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Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray por Satoh, Kouji, Doi, Koji, Nagata, Toshifumi, Kishimoto, Naoki, Suzuki, Kohji, Otomo, Yasuhiro, Kawai, Jun, Nakamura, Mari, Hirozane-Kishikawa, Tomoko, Kanagawa, Saeko, Arakawa, Takahiro, Takahashi-Iida, Juri, Murata, Mitsuyoshi, Ninomiya, Noriko, Sasaki, Daisuke, Fukuda, Shiro, Tagami, Michihira, Yamagata, Harumi, Kurita, Kanako, Kamiya, Kozue, Yamamoto, Mayu, Kikuta, Ari, Bito, Takahito, Fujitsuka, Nahoko, Ito, Kazue, Kanamori, Hiroyuki, Choi, Il-Ryong, Nagamura, Yoshiaki, Matsumoto, Takashi, Murakami, Kazuo, Matsubara, Ken-ichi, Carninci, Piero, Hayashizaki, Yoshihide, Kikuchi, Shoshi

“…Although highly accurate genome sequences of indica and japonica rice are available, additional resources such as full-length complementary DNA (FL-cDNA) sequences are also indispensable for comprehensive analyses of gene structure and function. …”
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Genetic and antigenic diversity of Bubaline alphaherpesvirus 1 por Tau, Rocio Lucia, Marandino, Ana, Torales, Fatima Anabel, Campos, Fabricio, Roehe, Paulo Michel, Konrad, Jose Luis, Romera, Sonia Alejandra, Perez, Ruben, Maidana, Silvina Soledad

“…This study provides complete genome sequences of five BuHV-1 strains isolated in Argentina, marking the first genomic characterization of BuHV-1 from the Americas. …”
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Microbiota in Goat Buck Ejaculates Differs Between Breeding and Non-breeding Seasons por Mocé, Maria Lorena, Esteve, Inés Carolina, Pérez-Fuentes, Sara, Gómez, Ernesto A., Mocé, Eva

“…The microbiota was characterized by genomic sequencing technology. Sperm quality was also evaluated. …”
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Predicting genome sizes and restriction enzyme recognition-sequence probabilities across the eukaryotic tree of life por Herrera, Santiago, Reyes Herrera, Paula H., Shank, Timothy M.

“…This number can only be directly determined if a reference genome sequence is available, or it can be estimated if the genome size and restriction recognition sequence probabilities are known. …”
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A new Multi Locus Variable Number of Tandem Repeat Analysis Scheme for epidemiological surveillance of Xanthomonas vasicola pv. musacearum, the plant pathogen causing bacterial wil... por Nakato, G.V., Rojas, J.L.F., Verniere, C., Blondin, L., Coutinho, Teresa A., Mahuku, George S., Wicker, E.

“…In this study, we identified microsatellite loci from nine published Xvm genome sequences. Of the 36 detected microsatellite loci, 21 were selected for primer design and 19 determined to be highly typeable, specific, reproducible and polymorphic with two- to four- alleles per locus on a sub-collection. …”
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Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle por Riggio, V., Tijjani, Abdulfatai, Callaby, R., Talenti, A., Wragg, D., Obishakin, E.T., Ezeasor, C.K., Jongejan, F., Ogo, N.I., Aboagye-Antwi, F., Touré, A., Nzalawahej, J., Diallo, B., Missohou, A., Belem, A.M.G., Djikeng, Appolinaire, Julef, Nick, Fourie, J., Labuschagne, Maryke T., Madder, M., Marshall, Karen, Prendergast, James G.D., Morrison, Liam J.

“…We used 409 whole-genome sequences (WGS) spanning global cattle breeds, and a real cohort of 2481 individuals (including African breeds) that were genotyped with the Illumina high-density (HD) array and the GeneSeek bovine 50 k array.We found that commercially available arrays were not effective in capturing variants that segregate among African indicine animals. …”
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Microsatellite marker diversity in common bean (Phaseolus vulgaris L.) por Blair, Matthew W., Giraldo Zapata, Martha C., Buendía Castellanos, Hector F., Tovar Luque, E., Duque E., Myriam Cristina, Beebe, Stephen E.

“…Two types of microsatellites were evaluated, based respectively on gene coding and genomic sequences. Genetic diversity was evaluated by estimating the polymorphism information content (PIC), as well as the distribution and range of alleles sizes. …”
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Identification of multiple interacting alleles conferring low glycerol and high ethanol yield in Saccharomyces cerevisiae ethanolic fermentation por Hubmann, Georg, Mathe, L., Foulquié Moreno, Maria R., Duitama, Jorge, Nevoigt, E, Thevelein, JM

“…Using segregants from the backcross of 26B with the inferior parent strain, we applied pooled-segregant whole-genome sequence analysis and identified three minor quantitative trait loci (QTLs) linked to low glycerol/high ethanol production. …”
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Development and validation of genomic tools for marker-assisted breeding of cassava mosaic disease resistance in cassava (Manihot esculenta) por Gedil, Melaku A, Otti, G., Enok, L., Kumar, L.

“…Candidate R-genes were identified by selecting genes annotated with characteristic resistance domains following sequence homology search of primer sequences of the SSR and SCAR markers on cassava genomic sequences using phytozome (www.phytozome.net). …”
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Two novel flavi-like viruses shed light on the plant-infecting koshoviruses por Debat, Humberto Julio, Bejerman, Nicolas Esteban

“…Here, we report the identification and characterization of two novel RNA viruses that show a genetic and evolutionary relationship to the previously identified “koshoviruses”. Their genome sequences were obtained from transcriptomic datasets of the flowering plants Coptis teeta and Sonchus asper. …”
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Pan-Genomic Analysis Permits Differentiation of Virulent and Non-virulent Strains of Xanthomonas arboricola That Cohabit Prunus spp. and Elucidate Bacterial Virulence Factors por Garita-Cambronero, Jerson, Palacio-Bielsa, Ana, López, María M., Cubero, Jaime

“…Pathogenicity of these strains was analyzed and the genome sequences of two Xap-look-a-like strains, CITA 14 and CITA 124, non-virulent to Prunus spp., were obtained and compared to those available genomes of X. arboricola associated with this host plant. …”
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Genomic epidemiology of Escherichia coli: antimicrobial resistance through a One Health lens in sympatric humans, livestock and peri-domestic wildlife in Nairobi, Kenya por Muloi, Dishon M., Hassell, James M., Wee, B.A., Ward, M.J., Bettridge, Judy M., Kivali, Velma, Kiyong'a, Alice, Ndinda, Christine, Gitahi, N., Ouko, T.T., Imboma, Titus, Akoko, James M., Murungi, Maurice K., Njoroge, Samuel M., Muinde, Patrick, Alumasa, Lorren, Kaitho, T., Amanya, Fredrick, Ogendo, Allan, Bunnik, B.A.D. van, Kiiru, J., Robinson, Timothy P., Kang'ethe, Erastus K., Kariuki, S., Pedersen, A.B., Fèvre, Eric M., Woolhouse, Mark E.J.

“…Methods We conducted a structured epidemiological survey of 99 households across Nairobi, Kenya, and whole genome sequenced E. coli isolates from 311 human, 606 livestock and 399 wildlife faecal samples. …”
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Genetic variation for tolerance to high temperatures in a population of Drosophila melanogaster por Rolandi, Carmen, Lighton, John R.B., De La Vega, Gerardo, Schilman, Pablo Ernesto, Mensch, Julián

“…To do so, we used adult flies derived from a natural population belonging to the Drosophila Genetic Reference Panel, for which genomic sequencing data are available. We characterized the phenotypic variation of the upper thermal limit in 34 lines by measuring knockdown temperature (i.e., critical thermal maximum [CTmax]) by exposing flies to a ramp of increasing temperature (0.25°C/min). …”
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Incomplete sterols and hopanoids pathways in ciliates: Gene loss and acquisition during evolution as a source of biosynthetic genes por Tomazic, Mariela Luján, Poklepovich Caride, Tomás Javier, Nudel, Berta Clara, Nusblat, Alejandro David

“…Although it is generally assumed that ciliates do not synthesize sterols, and many of them are indeed auxotrophic, a large set of annotated genomic sequences and experimental data from recently studied organisms indicate that they can carry putative genes and respond to the presence/absence of precursors in various ways. …”
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Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray por Fernandez, Paula Del Carmen, Soria, Marcelo Abel, Blesa, David, Di Rienzo, Julio A., Moschen, Sebastian Nicolas, Rivarola, Maximo Lisandro, Clavijo, Bernardo, Gonzalez, Sergio, Peluffo, Lucila, Principi, Dario, Dosio, Guillermo, Aguirrezabal, Luis, García-García, Francisco, Conesa, Ana, Hopp, Horacio Esteban, Dopazo, Joaquín, Heinz, Ruth Amelia, Paniego, Norma Beatriz

“…Oligonucleotide-based microarrays with accurate gene coverage represent a key strategy for transcriptional studies in orphan species such as sunflower, H. annuus L., which lacks full genome sequences. The goal of this study was the development and functional annotation of a comprehensive sunflower unigene collection and the design and validation of a custom sunflower oligonucleotide-based microarray. …”
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