Resultados de búsqueda - "genome sequencing"

GreenPhylDB v5: a comparative pangenomic database for plant genomes por Guignon, Valentin, Touré, Abdel, Droc, Gaëtan, Dufayard, Jean-François, Conte, Matthieu, Rouard, Mathieu

“…GreenPhylDBv5 introduces the concept of comparative pangenomics by harnessing multiple genome sequences by species. We created 19 pangenes and processed them with other species still relying on one genome. …”
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Presence of methicillin resistant Staphylococcus aureus (MRSA) in feces of the small Indian mongooses (Urva auropunctata) on Saint Kitts and Nevis, West Indies por Hoefer, A., Becker, A.A.M.J., Moodley, Arshnee, Boyen, F., Butaye, P.

“…The isolated S. aureus strains were identified using MALDI-TOF and further characterized by whole genome sequence analysis. The fecal microbiome study identified the presence of S. aureus in 5 animals. …”
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Diagnostic and diversity of a novel secovirid affecting cassava in the Americas por Jiménez Polo, Jenyfer, Leiva Sandoval, Ana Maria, Fernandez Huaytalla, Elizabeth, Bartolini, Ida, Cuéllar, Wilmer Jose

“…Using Oxford Nanopore Technology we complete the genome sequence of a field isolate of CsTLV, showing the characteristic genome arrangement of members of the genus Torradovirus. interestingly CsTLV encodes an atypical Maf / HAM1 domain that functions in eukaryotes to protect cells against mutagenesis only present in heterologous viruses of the Potyviridae family. …”
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Hypovirulence of Colletotrichum gloesporioides associated with dsRNA mycovirus isolated from a mango orchard in Thailand por Suharto, Aditya R., Jirakkakul, Jiraporn, Eusebio-Cope, Ana, Salaipeth, Lakha

“…Here, we describe a double-stranded RNA (dsRNA) mycovirus, which was isolated from a field strain of C. gloeosporioides, Ssa-44.1. The 2939 bp genome sequence comprises two open reading frames (ORFs) that encode for a putative protein and RNA-dependent RNA polymerase (RdRp). …”
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Identification of heterotic loci with desirable allelic interaction to increase yield in rice por Xiong, Yin, Zhang, Chaopu, Zhou, Hongju, Sun, Wenqiang, Wang, Peng, Wang, Dianwen, Qiu, Xianjin, Ali, Jauhar, Yu, Sibin

“…A large number of heterotic loci were identified for 12 yield-related traits in one parental population of chromosome segment substitution lines (CSSLs) and two test populations, which were interconnected by CSSLs derived from two rice genome-sequenced cultivars, Nipponbare and Zhenshan 97. …”
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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants por D’Hont, Angélique, Denoeud, F., Aury, J.M., Baurens, F.C., Guignon, Valentin, Dita, M., Roux, N.

“…This first monocotyledon high-continuity whole-genome sequence reported outside Poales represents an essential bridge for comparative genome analysis in plants. …”
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Characterization of the major fragance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice por Bourgis, Fabienne, Guyot, R., Gherbi, H, Tailliez, E, Amabile, I, Salse, J, Lorieux, Mathias, Delseny, M, Ghesquière, Alain

“…We used a RIL population from a cross between Azucena and IR64, a non-aromatic indica, the reference genomic sequence of Nipponbare (japonica) and 93–11 (indica) as well as an Azucena BAC library, to identify the major fragance gene in Azucena. …”
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The cassava genome: current progress, future directions por Prochnik, S.E., Marri, P.R., Desany, B, Rabinowitch, P.D., Kodira, C, Fauquet, Claude M., Tohme, Joseph M., Rodríguez, F., Mohiuddin, M, Harkins, T, Rokhsar, DS, Rounsley, S.

“…Maps based on simple sequence repeat (SSR)-, and EST-derived single nucleotide polymorphisms (SNPs) already exist. Thanks to the genome sequence, a high-density linkage map is currently being developed from a cross between two diverse cassava cultivars: one susceptible to cassava brown streak disease; the other resistant. …”
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In silico mapping of Conserved Ortholog Set (COS) markers in the potato genome. por Lindqvist-Kreuze, H., Portal, L., Rodríguez, F., Simon, R., Mueller, L., Spooner, D.M., Bonierbale, Merideth W.

“…We amplified over 300 COS markers from diverse set of Solanum germplasm, sequenced them and aligned into the whole genome sequence of potato. We also mapped a set of COS markers genetically using three diploid interspecific Solanum crosses. …”
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A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses por Bömer, M., Turaki, A.A., Silva, G., Kumar, P. Lava, Seal, S.E.

“…This resulted in the identification and characterisation of nine complete genomic sequences (7.4–7.7 kbp) of existing and previously undescribed DBV phylogenetic groups from Dioscorea alata and Dioscorea rotundata accessions. …”
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Breeding for Disease Resistance in Cacao por Gutiérrez, Osman A., Campbell, Alina S., Phillips Mora, Wilbert

“…Recently, numerous molecular tools, including the genome sequences of two varieties of cacao, have been developed and/or made available to accelerate the breeding process. …”
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Draft genome assembly and bioinformatic analysis of a denovo sequenced genome of Treponema phagedenis like strain V1 por Mushtaq, Mamoona

“…Annotation of the draft genome sequence using an in-house annotation pipeline predicted 3507 open reading frames (ORFs) of which, 1018 encode for proteins that have homologues in T. denticola and 382 ORFs encode for proteins having homologues in T. pallidum. …”
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Molecular epidemiology and diversity of SARS-CoV-2 in Ethiopia, 2020–2022 por Sisay, A., Tshiabuila, D., Wyk, S. van, Tesfaye, A., Mboowa, G., Oyola, Samuel O., Tesema, S.K., Baxter, C., Martin, D., Lessells, R., Tegally, H., Moir, M., Giandhari, J., Pillay, S., Singh, L., Ramphal, Y., Maharaj, A., Pillay, Y., Naidoo, Y., Ramphal, U., Chabuka, L., Wilkinson, E., Oliveira, T. de, Desta, A.F., San, J.E.

“…These results highlight Ethiopia’s role in SARS-CoV-2 dissemination and the urgent need for balanced, near-real-time genomic sequencing.…”
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A standardized pipeline for assembly and annotation of African swine fever virus genome por Spinard, E., Dinhobl, M., Erdelyan, C.N.G., O’Dwyer, J., Fenster, J., Birtley, H., Tesler, N., Calvelage, S., Leijon, M., Steinaa, Lucilla, O'Donnell, V., Blome, S., Bastos, A., Ramirez-Medina, E., Lacasta, Anna, Ståhl, K., Qiu, H., Nilubol, D., Tennakoon, C., Masembe, C., Faburay, B., Ambagala, A., Williams, D., Ribeca, P., Borca, M.V., Gladue, D.P.

“…Obtaining a complete good-quality sequence and annotation for the long double-stranded DNA genome of the African swine fever virus (ASFV) from next-generation sequencing (NGS) technology has proven difficult, despite the increasing availability of reference genome sequences and the increasing affordability of NGS. …”
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Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria por Otto, T.D., Gilabert, A., Crellen, T., Böhme, U., Arnathau, C., Sanders, M., Oyola, Samuel O., Okouga, A.P., Boundenga, L., Willaume, E., Ngoubangoye, B., Moukodoum, N.D., Paupy, C., Durand, P., Rougeron, V., Ollomo, B., Renaud, F., Newbold, C.J., Berriman, M., Prugnolle, F.

“…Striking copy number and structural variations were observed within gene families 33 and one, stevor shows a host specific sequence pattern. The complete genome sequence of the 34 closest ancestor of P. falciparum enables us to estimate confidently for the first time the timing of 35 the beginning of speciation to be 40,000-60,000 years ago followed by a population bottleneck 36 around 4,000-6,000 years ago. …”
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Bacillus toyonensis biovar Thuringiensis: A novel entomopathogen with insecticidal activity against lepidopteran and coleopteran pests por Sauka, Diego Herman, Peralta, Cecilia, Pérez, Melisa Paula, Onco, Maria Ines, Fiodor, Angelika, Caballero, Javier, Caballero, Primitivo, Berry, Colin, Del Valle, Eleodoro Eduardo, Palma, Leopoldo

“…However, since its genome sequence shared > 98% ANI with several Bacillus toyonensis genomes, the strain has subsequently been renamed as Bacillus toyonensis biovar Thuringiensis and designated Bto-UNVM_94. …”
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Characterisation and transferability of transcriptomic microsatellite markers for Nothofagus species por El Mujtar, Veronica Andrea, Lopez, Micaela, Amalfi, Sabrina, Pomponio, Maria Florencia, Marcucci Poltri, Susana Noemi, Torales, Susana Leonor

“…Moreover, transcriptomic SSRs showed higher performance compared with published anonymous microsatellites isolated from genome sequences without annotation. This set of transcriptomic microsatellites will be useful to the scientific community working on conservation and evolutionary aspects of Nothofagus species.…”
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Molecular characterization of a new virus species identified in yam (Dioscorea spp.) by high-throughput sequencing por Silva, G., Bömer, M., Rathnayake, A.I., Sewe, S.O., Visendi, P., Oyekanmi, J.O., Quain, M.D., Akomeah, B., Kumar, P. Lava, Seal, S.E.

“…Twenty-three of the samples in which YVY was detected showed mosaic and chlorotic leaf symptoms, but Yam mosaic virus was also detected in these samples. Complete genome sequences of two YVY viral isolates were assembled and found to contain five open reading frames (ORFs). …”
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Reproduction of contagious caprine pleuropneumonia reveals the ability of convalescent sera to reduce hydrogen peroxide production in vitro por Liljander, Anne M., Sacchini, F., Stoffel, M.H., Schieck, Elise G., Stokar-Regenscheit, N., Labroussaa, F., Heller, M., Salt, Jeremy, Frey, J., Falquet, L., Goovaerts, D., Jores, Joerg

“…Reannotation of the genome sequence of ILRI181 and F38T revealed the existence of genes encoding the complete glycerol uptake and metabolic pathways involved in hydrogen peroxide (H2O2) production in the phylogenetically related pathogen M. mycoides subsp. mycoides. …”
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The genes and genomes of the potato por Ghislain, M., Douches, D.S.

“…The public availability of the first potato genome sequence has created new ways to identify the genetic determinants of key traits of the potato as well as ways to use this knowledge for speeding up variety development. …”
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