Resultados de búsqueda - "genome sequencing"

Draft genome assemblies of 38 Aspergillus parasiticus isolates collected from South Georgia crop fields por Gangurde, Sunil S., Asija, Sejal, Bajaj, Prasad, Fountain, Jake C., Abbas, Hamed K., Holbrook, C. Corley, Kemerait, Robert C., Guo, Baozhu

“…The average BUSCO completeness score for these assemblies was 99.1%. The genome sequences generated for these 38 isolates will serve as a valuable genomic resource for the community working on aflatoxin mitigation strategies in crops.…”
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Biological and molecular characterization of bean bushy stunt virus, a novel bipartite begomovirus infecting common bean in northwestern Argentina por Reyna, Pablo Gastón, Bejerman, Nicolas Esteban, Laguna, Irma Graciela, Rodriguez Pardina, Patricia

“…Dot-blot hybridization tests showed that the begomoviruses bean golden mosaic virus and tomato yellow vein streak virus were the most prevalent, but they also revealed the presence of unknown begomoviruses. The complete genome sequence of one of these unknown begomoviruses was determined. …”
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Molecular characterization of divergent grapevine Pinot gris virus isolates and their detection in Slovak and Czech grapevines por Glasa, Miroslav, Predajna, Lukas, Kominek, Petr, Nagyova, Alzbeta, Candresse, Thierry, Olmos, Antonio

“…Analysis of complete genome sequences of three Slovak isolates of grapevine Pinot gris virus (GPGV) showed their low heterogeneity (reaching 1.7 %) and a close relationship to the Italian NC_015782 isolate (4.2-4.5 % divergence). …”
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The first genotype II African swine fever virus isolated in Africa provides insight into the current Eurasian pandemic por Njau, Emma P., Domelevo Entfellner, Jean-Baka, Machuka, Eunice M., Bochere, Edwina N., Cleaveland, S., Shirima, G.M., Kusiluka, L.J.M., Upton, C., Bishop, Richard P., Pelle, Roger, Okoth, Edward A.

“…Multiple complete genotype II genome sequences have been reported from European, Russian and Chinese virus isolates but no complete genome sequences have yet been reported from Africa. …”
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Deep sequencing of virus derived small interfering RNAs and RNA from viral particles shows highly similar mutational landscape of a plant virus population por Kutnjak, D., Rupar, M., Gutiérrez Aguirre, I., Curk, T., Kreuze, Jan F., Ravnikar, M.

“…Sequencing of the viral particle pool enhanced the efficiency of consensus viral genome sequence reconstruction. Nonhomologous recombinations were commonly detected in the viral particle pool, with a hot spot in the 3′ untranslated and coat protein regions of the genome. …”
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Rice Galaxy: an open resource for plant science published por CGIAR Research Program on Rice

“…Rice Galaxy (http://galaxy.irri.org) is a publicly available website for bioinformatic analyses using 3000 rice genomes sequenced from IRRI's rice genbank (3KRG project, https://gigascience.biomedcentral.com/articles/10.1186/2047-217X-3-7), Antenna Panel (rice genotypes that act as sensors for environmental changes, https://agritrop.cirad.fr/590501/) and other specialized datasets. …”
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Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 por Zhang, Jianwei, Chen, Ling-Ling, Xing, Feng, Kudrna, David A., Yao, Wen, Copetti, Dario, Mu, Ting, Li, Weiming, Song, Jia-Ming, Xie, Weibo, Lee, Seunghee, Talag, Jayson, Shao, Lin, An, Yue, Zhang, Chun-Liu, Ouyang, Yidan, Sun, Shuai, Jiao, Wen-Biao, Lv, Fang, Du, Bogu, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-Xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Zhou, Zhi-Wei, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A., Zhang, Qifa

“…Here, we generated high-quality genome sequences for two elite rice varieties, Zhenshan 97 and Minghui 63, representing the two groups of indica rice and the parents of a leading rice hybrid. …”
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TparvaDB: A database to support Theileria parva vaccine development por Visendi, P., Ng'ang'a, W., Bulimo, Wallace, Bishop, Richard P., Ochanda, J., Villiers, Etienne P. de

“…It contains a complete reference genome sequence, Expressed Sequence Tags (ESTs), Massively Parallel Signature Sequencing (MPSS) expression tag data and related information from both public and private repositories. …”
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The Tpv2 family of retrotransposons of Phaseolus vulgaris: Structure, integration characteristics, and use of genotype classification por Garber, K, Bilic, I, Pusch, O, Tohme, Joseph M., Bachmair, A, Schweizer, D., Jantsch, V

“…Probes derived from Tpv2, as well as flanking genomic sequences, may be useful for classifying Phaseolus cultivars.…”
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First characterization of a canine parvovirus causing fatal disease in coatis (Nasua nasua) por Bucafusco, Danilo, Argibay, Hernán Darío, Diaz, Leandro, Vega, Celina Guadalupe, Minatel, Leonardo, Postma, Gabriela C., Rinas, Miguel, Bratanich, Ana Cristi

“…Analysis of the full-length genome sequence revealed that it resembled CPV-but also contained a mutation in the VP2 protein (Arg377Ser) that has not been described previously. …”
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Characterization and comparative analysis of the genome of Puccinia sorghi Schwein, the causal agent of maize common rust por Rochi, Lucía, Dieguez, Maria Jose, Burguener, Germán, Darino, Martín Alejandro, Pergolesi, María Fernanda, Ingala, Lorena Romina, Cuyeu, Alba Romina, Turjanski, Adrián, Kreff, Enrique D., Sacco, Francisco

“…In spite of this, the Ps genomic sequence was not available. We used Illumina sequencing to rapidly produce the 99.6 Mb draft genome sequence of Ps race RO10H11247, derived from a single-uredinial isolate from infected maize leaves collected in the Argentine Corn Belt Region during 2010. …”
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Genomewide SNP variation reveals relationships among landraces and modern varieties of rice por McNally, Kenneth L., Childs, Kevin L., Bohnert, Regina, Davidson, Rebecca M., Zhao, Keyan, Ulat, Victor J., Zeller, Georg, Clark, Richard M., Hoen, Douglas R., Bureau, Thomas E., Stokowski, Renee, Ballinger, Dennis G., Frazer, Kelly A., Cox, David R., Padhukasahasram, Badri, Bustamante, Carlos D., Weigel, Detlef, Mackill, David J., Bruskiewich, Richard M., Rätsch, Gunnar, Buell, C. Robin, Leung, Hei, Leach, Jan E.

“…Rice, the primary source of dietary calories for half of humanity, is the first crop plant for which a high-quality reference genome sequence from a single variety was produced. We used resequencing microarrays to interrogate 100 Mb of the unique fraction of the reference genome for 20 diverse varieties and landraces that capture the impressive genotypic and phenotypic diversity of domesticated rice. …”
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Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics por Arensburger, P., Megy, K., Waterhouse, Robert M., Abrudan, J., Amedeo, P., Antelo, B., Bartholomay, L., Bidwell, S., Caler, E., Camara, F., Campbell, C.L., Campbell, K.S., Casola, C., Castro, M.T., Chandramouliswaran, I., Chapman, S.B., Christley, S., Costas, J., Eisenstadt, E., Feschotte, C., Fraser-Liggett, C.M., Guigo, R., Haas, B., Hammond, M., Hansson, B.S., Hemingway, J., Hill, S.R., Howarth, C., Ignell, R., Kennedy, R.C., Kodira, C.D., Lobo, N.F., Mao, C., Mayhew, G., Michel, K., Mori, A., Liu, N., Naveira, H., Nene, Vishvanath M.

“…Here, we describe the genomic sequence of C. quinquefasciatus: Its repertoire of 18,883 protein-coding genes is 22% larger than that of Aedes aegypti and 52% larger than that of Anopheles gambiae with multiple gene-family expansions, including olfactory and gustatory receptors, salivary gland genes, and genes associated with xenobiotic detoxification.…”
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Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain por Giampetruzzi, Annalisa, Velasco-Amo, María P., Marco-Noales, Ester, Montes-Borrego, Miguel, Román-Écija, Miguel, Navarro-Herrero, Inmaculada, Monterde, Adela, Barbé, Silvia, Almeida, Rodrigo P. P., Saldarelli, Pasquale, Saponari, Maria, Montilon, Vito, Savino, Vito Nicola, Boscia, Donato, Landa, Blanca B.

“…The availability of these draft genomes contribute to extend the European genomic sequence dataset, a first step toward setting new research to elucidate the pathway of introduction and spread of the numerous strains of this subspecies so far detected in Europe.…”
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Natural Infection of Pomegranate (Punica Granatum) by Apple Dimple Fruit Viroid por Ruiz-García, Ana B., Olmos, Antonio, Marais, Armelle, Faure, Chantal, Candresse, Thierry

“…Full length ADFVd genomic sequences have been recovered, increasing knowledge on the diversity of this viroid and on the pomegranate virome in which only four viruses and one viroid had previously been reported.…”
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Variation in seed metabolites between two indica rice accessions differing in seed longevity por Lee, Jae-Sung, Hay, Fiona R.

“…Among 288 metabolites, two flavonoids (kaempferide and quercetin-3-arabinoside), one amino acid (S-sulfocysteine) and one sugar (D-glucose) increased in “IR65483” seeds after storage but were not detected in “WAS170” seeds. Based on the genome sequence database, we identified clear allelic differences with non-synonymous mutations on the six flavonol synthase genes regulating the accumulation of kaempferol- and quercetin-metabolites. …”
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Controlling malaria and African trypanosomiasis: The role of the mouse por Foote, S.J., Iraqi, F.A., Kemp, Stephen J.

“…The availability of high-density linkage maps, the genome sequence and transcriptomics tools has transformed the power of the mouse to illuminate such fundamental aspects of the host-parasite interaction.…”
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Rice Galaxy: an open resource for plant science por Juanillas, Venice, DeReeper, Alexis, Beaume, Nicolas, Droc, Gaëtan, Dizon, Joshua, Mendoza, John Robert, Perdon, Jon Peter, Mansueto, Locedie, Triplett, Lindsay, Lang, Jillian, Zhou, Gabriel, Ratharanjan, Kunalan, Plale, Beth, Haga, Jason, Leach, Jan E., Ruiz, Manuel, Thomson, Michael, Alexandrov, Nickolai, Larmande, Pierre, Kretzschmar, Tobias, Mauleon, Ramil P.

“…Germplasm collections representing rice diversity, improved varieties, and elite breeding materials are accessible through rice gene banks for use in research and breeding, with many having genome sequences and high-density genotype data available. …”
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Revealing sequence variation patterns in rice with machine learning methods por Bohnert, Regina, Zeller, Georg, Clark, Richard M., Childs, Kevin L., Ulat, Victor, Stokowski, Renee, Ballinger, Dennis, Frazer, Kelly, Cox, David, Bruskiewich, Richard, Buell, C. Robin, Leach, Jan, Leung, Hei, McNally, Kenneth L., Weigel, Detlef, Rätsch, Gunnar

“…The major breakthrough at the turn of the millennium was the completion of genome sequences for individuals from many species, including human, worm and rice. …”
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Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches por Arias-Giraldo, Luis F., Giampetruzzi, Annalisa, Metsis, Madis, Marco-Noales, Ester, Imperial, Juan, Velasco-Amo, María P., Román-Écija, Miguel, Landa, Blanca B.

“…We present the first complete genome sequences of two Spanish strains: X. fastidiosa subsp. fastidiosa IVIA5235 from Mallorca and X. fastidiosa subsp. multiplex IVIA5901 from Alicante, using Oxford Nanopore and Illumina sequence reads, and two hybrid approaches for genome assembly. …”
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