Resultados de búsqueda - "genome sequencing"

Molecular characterization of yerba mate chlorosis-associated virus, a putative cytorhabdvirus infecting yerba mate (Ilex paraguariensis) por Bejerman, Nicolas Esteban, De Breuil, Soledad, Debat, Humberto Julio, Miretti, Marcos, Badaracco, Alejandra, Nome Docampo, Claudia

“…We have determined the complete genome sequence of this virus, which is 12,876 nt long. …”
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Potato virus Y; the Andean connection por Fuentes, S., Jones, R.A.C., Matsuoka, H., Ohshima, K., Kreuze, Jan F., Gibbs, A.J.

“…We report the isolation and genomic sequences of 32 Peruvian isolates of PVY which, together with 428 published PVY genomic sequences, gave an alignment of 460 sequences. …”
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Detection and molecular characterisation of Grapevine Syrah virus-1 isolates from Central Europe por Glasa, Miroslav, Predajna, Lukas, Soltys, Katarína, Sabanadzovic, Sead, Olmos, Antonio

“…Subsequently, complete genome sequences of 3 GSyV-1 isolates (2 Slovak and 1 Czech) were determined by Sanger sequencing, showing a typical marafivirus genome organization. …”
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Genomics research: Prospects for improving livestock productivity por Nene, Vishvanath M., Morzaria, S.P., Baker, L., Odonyo, A., Rege, J.E.O., Zerbini, E., Bishop, Richard P.

“…Topics of discussion include, constraints to livestock productivity in developing countries; biotechnology research at ILRI; improvement of rumen fermentation; livestock genetic resources and genetics of disease resistance; animal health improvement by vaccine Development; Developments in genomics research; relevance of T. parva genome sequence for ECF; partnership in sequencing T. parva; and constraints to delivery.…”
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The genome of Caenorhabditis bovis por Stevens, L., Rooke, S., Falzon, Laura C., Machuka, Eunice M., Momanyi, Kelvin N., Murungi, Maurice K., Njoroge, Samuel M., Odinga, Christian O., Ogendo, A., Ogola, J., Fèvre, Eric M., Blaxter, M.

“…We sequenced the genome of C. bovis using the Oxford Nanopore MinION platform in a nearby field laboratory and used the data to generate a chromosome-scale draft genome sequence. We exploited this draft genome sequence to reconstruct the phylogenetic relationships of C. bovis to other Caenorhabditis species and reveal the changes in genome size and content that have occurred during its evolution. …”
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Genome assembly, comparative genomics, and identification of genes/pathways underlying plant growth-promoting traits of an actinobacterial strain, Amycolatopsis sp. (BCA-696) por Gandham, Prasad, Vadla, Nandini, Saji, Angeo, Srinivas, Vadlamudi, Ruperao, Pradeep, Selvanayagam, Sivasubramani, Saxena, Rachit K., Rathore, Abhishek, Gopalakrishnan, Subramaniam, Thakur, Vivek

“…The draft genome sequence of an agriculturally important actinobacterial species Amycolatopsis sp. …”
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The Banana Genome Hub por Droc, Gaëtan, Lariviere, D., Guignon, Valentin, Yahiaoui, N., This, D., Garsmeur, O., Dereeper, A., Hamelin, C., Argout, X., Dufayard, Jean-François, Lengelle, J., Baurens, F.C., Cenci, A., Pitollat, B., D’Hont, Angélique, Ruíz, M., Rouard, M., Bocs, S.

“…The banana reference genome sequence (Musa acuminata) was recently released. …”
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Highly syntenic and yet divergent: a tale of two Theilerias por Weir, W., Sunter, J., Chaussepied, M., Skilton, Robert A., Tait, A., Villiers, Etienne P. de, Bishop, Richard P., Shiels, B., Langsley, G.

“…The published genomic sequences of the two major host-transforming Theileria species of cattle represent a rich resource of information that has allowed novel bioinformatic and experimental studies into these important apicomplexan parasites. …”
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Genomic location of SSR markers of the potato genetic identity kit. por Ghislain, M., Herrera, M.R., Montenegro, J.D.

“…Finally, 4 SSR markers [STM0019, STM1052, STM1106, and STM5121] were not found anywhere in the genome sequence of the doubled-monoploid potato. This lack of concordance for about 30% of the SSR markers of the PGI kit between physical map and genetic linkage map may be explained by the unfinished status of the potato genome sequence as well as the divergence between these potato taxonomic groups.…”
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An ESTderived SNP and SSR genetic linkage map of cassava (Manihot esculenta Crantz) por Rabbi, Ismail Y., Kulembeka, H.P., Masumba, E., Marri, P., Ferguson, Morag E.

“…About 94.2% of the mapped SNPs and SSRs have also been localized on scaffolds of version 4.1 assembly of the cassava draft genome sequence. This more saturated genetic linkage map of cassava that combines SSR and SNP markers should find several applications in the improvement of cassava including aligning scaffolds of the cassava genome sequence, genetic analyses of important agro-morphological traits, studying the linkage disequilibrium landscape and comparative genomics.…”
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Comparative genomics to uncover the secrets of tsetse and livestock-infective trypanosomes por Davila, A.M.R., Majiwa, Phelix A.O., Grisard, E.C., Aksoy, S., Melville, S.E.

“…Here, we discuss the need, relevance and advantage of having the Trypanosoma genomes sequenced, annotated and analyzed in a comparative genomics context. …”
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Evidence of balanced diversity at the chicken interleukin 4 receptor alpha chain locus por Downing, T., Lynn, D.J., Connel, S., Lloyd, A.T., Bhuiyan, A.K.F.H., Silva, P., Naqvi, A.N., Sanfo, R., Sow, R.S., Overseas Development Institute, Hanotte, Olivier H., O'Farrelly, C.O., Bradley, D.

“…The comparative analysis of genome sequences emerging for several avian species with the fully sequenced chicken genome enables the genome-wide investigation of selective processes in functionally important chicken genes. …”
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Johnsongrass Mosaic Virus por Trucco, Veronica Milagros, Giolitti, Fabian

“…The potyvirus johnsongrass mosaic virus (JGMV) was initially considered a strain of other potyviruses until it was determined to be an independent virus through genomic sequencing studies. This chapter reviews the main aspects of JGMV, including its identification and focusing on taxonomic and biological properties as well as epidemiological aspects and control measures.…”
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A Divergent Strain of Culex pipiens-Associated Tunisia Virus in the Malaria Vector Anopheles epiroticus por Debat, Humberto Julio, Ribeiro, José M.C.

“…Here, we report the draft genome sequence of a divergent strain ofCulex pipiens-associated Tunisia virus (CpATV) identified in the malaria vectorAnoph-eles epiroticus(CpATV-AnE). …”
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Genetic diversity and recombination analysis of NADC34-like porcine reproductive and respiratory syndrome viruses por Ye, Z., Wang, W., Zhu, Z., Wen, W., Hu Suk Lee, Li, X.

“…. • 12 consistent recombinant patterns (R1-R12) were defined across 176 NADC34-like whole-genome sequences. • Recombination hotspots in Chinese strains shifted from structural genes to ORF1a after 2020. • Lineage 1.8 is the primary minor parent driving NADC34-like genetic diversification.…”
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A comparative genome analysis of Rift Valley Fever virus isolates from foci of the disease outbreak in South Africa in 2008-2010 por Maluleke, Moabi R., Phosiwa, Maanda, Schalkwyk, Antoinette van, Michuki, George N., Lubisi, Baratang A., Kegakilwe, Phemelo S., Kemp, Stephen J., Majiwa, Phelix A.O.

“…The genome sequences of these viruses were compared with those of the viruses from earlier outbreaks in South Africa and in other countries. …”
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Crop improvement in the era of climate change: An integrated multi-disciplinary approach for common bean (Phaseolus vulgaris) por McClean, Phillip E., Burridge J, Beebe, Stephen E., Rao, Idupulapati M., Porch, Timothy G.

“…The genome sequence will also enable global gene expression studies that will highlight specific molecular-based stress responses. …”
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Drought Response in Wheat: Key Genes and Regulatory Mechanisms Controlling Root System Architecture and Transpiration Efficiency por Kulkarni, Manoj, Soolanayakanahally, Raju, Ogawa, Satoshi, Uga, Yusaku, Selvaraj, Michael Gomez, Kagale, Sateesh

“…The lack of a reference genome sequence for wheat and non-transgenic approaches for manipulation of gene functions in wheat in the past had impeded high-resolution interrogation of functional elements, including genes and QTLs, and their application in cultivar improvement. …”
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Characterization of Sour Cherry Isolates of Plum pox virus from the Volga Basin in Russia Reveals a New Cherry Strain of the Virus por Glasa, Miroslav, Prikhodko, Yuri, Predajna, Lukas, Nagyova, Alzbeta, Shneyder, Yuri, Zhivaeva, Tatiana, Subr, Zdeno, Cambra, Mariano, Candresse, Thierry

“…The comparison of complete genome sequences has shown that the nucleotide identity values with other PPV isolates reached only 77.5 to 83.5%. …”
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A novel strategy for the identification of antigens that are recognised by bovine MHC class I restricted cytotoxic T cells in a protozoan infection using reverse vaccinology por Graham, S.P., Honda, Y., Pelle, Roger, Mwangi, David Miano, Glew, E.J., Villiers, Etienne P. de, Shah, Tushaar, Bishop, Richard P., Bruggen, P. van der, Nene, Vishvanath M., Taracha, E.L.N.

“…We exploited the availability of the complete genome sequence data and bioinformatics tools to identify genes encoding secreted or membrane anchored proteins that may be processed and presented by the MHC class I molecules of infected cells to CTL.…”
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