Resultados de búsqueda - "genome sequencing"

Comparative Genetic Mapping between Clementine, Pummelo and Sweet Orange and the Interspecicic Structure of the Clementine Genome por Ollitrault, Patrick, Terol, Javier, Chen, Chunxian, Federici, Claire T., Lotfy, Samia, Hippolyte, Isabelle, Ollitrault, Frederique, Berard, Aurelie, Chauveau, Aurelie, Cuenca, José, Costantino, Gilles, Kacar, Yildiz Aka, Mu, Lisa, García-Lor, Andrés, Curk, Franck, Froelicher, Yann, Aleza, Pablo, Boland, Anne, Billot, Claire, Navarro, Luis, Luro, Francois, Roose, Mikeal L., Gmitter Jr., Frederick G., Talón, Manuel, Brunel, Dominique

“…The usefulness of this genetic map, anchored in the reference whole genome sequence, is discussed.…”
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Bean leafroll virus (BLRV) in Argentina: molecular characterization and detection in alfalfa fields por Trucco, Veronica Milagros, De Breuil, Soledad, Bejerman, Nicolas Esteban, Lenardon, Sergio Luis, Giolitti, Fabian

“…Manfredi BLRV-Arg had more than 96 % nucleotide and amino acid sequence identities, both for complete genome sequence and ORFs, with those of the two full-length genome sequences available in GenBank. …”
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Complete genome characterization of barley yellow dwarf virus-OYV por Sathees, Kanitha

“…One putative recombination event was detected when the genome sequence of BYDV-OYV was analysed together with 12 other isolates of the genus Luteovirus. …”
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Identifying genomic surveillance gaps in Africa for the global public health response to West Nile virus: a systematic review por Moir, M., Sitharam, N., Hofstra, L.M., Dor, G., Mwanyika, G., Ramphal, Y., Reichmuth, M.L., San, J.E., Gifford, R., Wilkinson, E., Tshiabuila, D., Preiser, W., Konou, A.A., Bitew, M., Onoja, A.B., Paganotti, G.M., Abera, A., Maror, J.A., Kayiwa, J., Abuelmaali, S., Lusamaki, E.K., CLIMADE Consortium, Venter, M., Burt, F., Baxter, C., Lessells, R., Oliveira, T. de, Tegally, H.

“…Although WNV is endemic to Africa, only few (n=63) whole genomic sequences are available from the continent. In this Review, we examined the status of the molecular testing and genomic sequencing of WNV across Africa and mapped its global spatiotemporal spread. …”
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Sequence analyses of novel Potato virus YNTN and resistance-breaking PVYO isolates from Sweden por Youssef, Asmaa

“…This study aimed to determine complete and partial genome sequences of some Swedish PVY isolates with novel biological properties. …”

Phragmivirus, a new genus within the family Potyviridae por Inoue-Nagata, A.K., Jordan, R., Kreuze, Jan F., Li, F., López-Moya, J.J., Mäkinen, K., Ohshima, K., Rubino, L., Wylie, S.

“…The members of the 12 genera are differentiated by genomic sequence identity, various functional motifs, and biological factors such as the type of the transmission vector and host range. …”
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The complete mitochondrial genome of Mong Cai pig (Susscrofa) in Vietnam por Thuy Nhien Thi Tran, Pan Ni, Jianhai Chen, Thuy Thi Le, Kemp, Stephen J., Han Jianlin, Haiyan Wang, Zhao, Shuhong

“…This complete mitochondrial genome sequence of Mong Cai pig is useful to further genetic studies on adaptation and performance.…”
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Exploring the tymovirales landscape through metatranscriptomics data por Bejerman, Nicolas Esteban, Debat, Humberto Julio

“…Here, we report the discovery of 31 novel viral genome sequences associated with 27 different host plant species, which were hidden in public databases. …”
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Identification and characterization of a new potyvirus infecting cucurbits por Perotto, Maria Cecilia, Pozzi, Elizabeth Alicia, Celli, Marcos Giovani, Luciani, Cecilia Elizabeth, Mitidieri, Mariel Silvina, Conci, Vilma Cecilia

“…The percentage identity for these two genome sequences, using BLASTn, was 77% to sweet potato virus c and 73% to tomato necrotic stunt virus. …”
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A Rickettsia Genome Overrun by Mobile Genetic Elements Provides Insight into the Acquisition of Genes Characteristic of an Obligate Intracellular Lifestyle por Gillespie, Joseph J., Joardar, Vinita S., Williams, Kelly P., Driscoll, Timothy, Hostetler, Jessica B., Nordberg, Eric, Shukla, Maulik, Walenz, Brian P., Hill, Catherine A., Nene, Vishvanath M., Azad, Abdu F., Sobral, Bruno W., Caler, Elisabet

“…Among Rickettsia species ( Alphaproteobacteria: Rickettsiales ), REIS has the largest genome sequenced to date (>2 Mb) and contains 2,309 genes across the chromosome and four plasmids (pREIS1 to pREIS4). …”
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Emergence of a Plant Pathogen in Europe Associated with Multiple Intercontinental Introductions por Landa, Blanca B., Castillo, Andreina I., Giampetruzzi, Annalisa, kahn, Alexandra, Román-Écija, Miguel, Velasco-Amo, María P., Navas-Cortés, Juan A., Marco-Noales, Ester, Barbé, Silvia, Moralejo, Eduardo, Coletta-Filho, Helvecio D., Saldarelli, Pasquale, Saponari, Maria, Almeida, Rodrigo P. P.

“…We compared whole-genome sequences of X. fastidiosa subspecies multiplex from America and strains associated with recent outbreaks in southern Europe to infer their likely origins and paths of introduction within and between the two continents. …”
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Tools for using the International Rice Genebank to breed for climate-resilient varieties por McNally, Kenneth L., Henry, Amelia

“…Tools to analyze the genome sequences of traditional varieties are accelerating the identification and deployment of genes conferring climate change resilience…”
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Evolutionary Relationships Among the Oryza Species por Wambugu P.W., Nyamongo D., Ndjiondjop, M.N., Henry R.J.

“…The use of nuclear and whole chloroplast genome sequences is helping define the relationships between the recent newly discovered Australian taxa which are believed to be novel gene pools. …”
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A look at trails through the pangenome visualization jungle por Durant, Éloi, Sabot, François, Conte, Matthieu, Rouard, Mathieu

“…Its definition can focus on the whole repertoire of genes within a group or can include blocks of genomic sequences shared between species. We introduce here a new visualization tool, based on a linear representation: the PANgenome Analyzer with CHromosomal Exploration (PANACHE). …”
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CGIAR capacity sharing with NARS to use digital sequence information in conservation and crop improvement programs. A submission from CGIAR for consideration by the Governing Body... por Lopez Noriega, Isabel, Rouard, Mathieu, Halewood, Michael, Hamilton, Ruaraidh Sackville

“…CGIAR submitted this report in response to the Plant Treaty Secretary's open request to Contracting Parties and stakeholders for information regarding their efforts ‘to reduce the existing gap on capacity between developed and developing countries’ regarding the use of digital sequence information/genomic sequence information (DSI/GSD).…”
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Molecular evidence confirms occurrence of Rhipicephalus microplus Clade A in Kenya and sub-Saharan Africa por Kanduma, Esther G., Emery, D., Githaka, Naftaly W., Nguu, E.K., Bishop, Richard P., Šlapeta, J.

“…The mitochondrial genome sequences of the two Kenyan R. microplus ticks clustered closely with reference genome sequences from Brazil, USA, Cambodia and India forming R. microplus Clade A. …”
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Phylogenetics and Evolution of Potato Virus V: Another Potyvirus that Originated in the Andes por Fuentes, S., Gibbs, A.J., Adams, I.P., Hajizadeh, M., Kreuze, Jan F., Fox, A., Blouin, A.G., Jones, R.A.C.

“…When the principal open reading frames of these genomic sequences together with those of nine previously published genomic sequences were analyzed, only two from Peru and one from Iran were found to be recombinant. …”
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Genomic surveillance of Rift Valley fever virus: From sequencing to lineage assignment por Juma, John, Fonseca, V., Konongoi, Samson L., Heusden, P. van, Roesel, Kristina, Sang, R., Bett, Bernard K., Christoffels, A., Oliveira, T. de, Oyola, Samuel O.

“…Lineage assignment using whole RVFV genome sequences (L, M and S-segments) did not achieve 100% specificity, sensitivity and accuracy for all the sequences analyzed. …”
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T cell epitope identification for bovine vaccines: An epitope mapping method for BoLA A-11 por Groot, A.S., Nene, Vishvanath M., Hegde, N.R., Srikumaran, S., Rayner , J., Martin, W.

“…Computer-driven algorithms that facilitate the discovery of T cell epitopes from protein and genome sequences are now being used to accelerate preclinical studies of human vaccines. …”
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Genome-Wide discovery and information resource development of DNA polymorphisms in Cassava por Sakurai, T., Mochida, Keiichi, Yoshida, T, Akiyama, K., Ishitani, Manabu, Seki, M., Shinozaki, Kazuo

“…Using the alignment of predicted transcribed sequences from the cassava draft genome sequence and ESTs from GenBank, we discovered 10,546 single-nucleotide polymorphisms and 647 insertions and deletions. …”
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