Search Results - "genome sequencing"

Characterisation and potential applications of Serratia odorifera INTA L401-1 in nematode biocontrol by Salas, Augusto, Ortiz, Leila Melina, Niz, José María, Magariños, Francisco, Del Valle, Eleodoro Eduardo, Achinelly, María Fernanda, Sauka, Diego Hernan

“…Greenhouse experiments with Meloidogyne incognita in tomato plants showed improved growth parameters (fresh root and shoot weight) with supernatant treatment, though nematode reduction was not statistically significant. Whole-genome sequencing of INTA L401-1 produced a 4.96 Mb draft genome, confirming its identity and revealing genes encoding nematicidal proteins (e.g. serralysin, chitinases) and bioactive compounds (e.g. serrawettins, siderophores). …”
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Genomic analysis of shiga toxin-containing Escherichia coli O157:H7 isolated from Argentinean cattle by Amadio, Ariel, Bono, James L., Irazoqui, Jose Matias, Larzabal, Mariano, Marques Da Silva, Wanderson, Eberhardt, María Florencia, Riviere, Nahuel Agustin, Gally, David, Manning, Shannon D., Cataldi, Angel Adrian

“…To better understand the molecular bases related to virulence, pathogenicity and evolution of EHEC O157:H7, we performed a comparative genomic analysis of these isolates through whole genome sequencing. The isolates classified as clade 8 (four strains) and clade 6 (four strains) contained 13 to 16 lambdoid prophages per genome, and the observed variability of prophages was analysed. …”
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Genomic study of Salmonella ser. Enteritidis from poultry farms in Argentina: Epidemiology and antimicrobial resistance in twenty strains by Hoffmann, Teresa Magali, Soria, Mario, Bueno, Dante Javier, Huberman, Yosef Daniel, Ishida, María, Sauders, Brian, Deiulio, Gregory, Dickey, Alyssa Wiedenmayer, Medina-Santana, José Luis, Vinueza-Burgos, Christian

“…This study used whole genome sequencing to assess the genetic diversity and resistance patterns of 20 SE strains collected from poultry farms in Entre Ríos, Argentina, between January 2020 and February 2021. …”
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Discovery of a resistance gene cluster associated with smut resistance in peanut by Chamberlin, Kelly D., Bennett, Rebecca S., Baldessari, Jorge Javier, De La Barrera, Guillermo, Cordes, Guillermo, Grandon, Nancy Gabriela, Mamani, Eva Maria Celia, Rodriguez, Ana Valeria, Morchetti, Sergio, Holbrook, Corley C., Ozias-Akins, Peggy, Ye, Chu, Tallury, Shyam P., Clevenger, Josh, Korani, W., Scheffler, Brian, Youngblood, Ramey Callahan, Simpson, Sheron

“…Chromosome level genome sequences were assembled for the resistant parent (Ascasubi) and susceptible parent (Granoleico) using PacBio HIFI sequencing. …”
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Genomically-selected antifungal Bacillaceae strains improve wheat yield and baking quality by Casal, Alejo, Gizzi, Fernán Oscar, Figueroa, Sol Agostina, Petitti, Tomás Denis, Ferraguti, Facundo Javier, Gaido, Jimena, Torres Manno, Mariano Alberto, Céccoli, Gabriel, Paoletti, Luciana, Dunlap, Christopher, Daurelio, Lucas Damián, Espariz, Martín

“…Initial screening of 576 sporulating isolates for antifungal activity against Fusarium graminearum, followed by RAPD analysis, identified 39 distinct genetic profiles, out of which 15 were classified in Bacillus amyloliquefaciens or Priestia megaterium groups by 16S RNA sequence. Whole-genome sequencing of selected strains enabled precise taxonomic classification and comprehensive trait prediction using in silico tools. …”
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Genetic background of temperament traits in standardbred trotters by Berglund, Paulina

“…The preliminary analysis of the whole genome sequencing data showed interesting results worth further investigation with data from more horses included.…”
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Las ómicas en el control biológico by Barrera, Gloria Patricia, Ghiringhelli, Pablo Daniel, Lewis Mosher, Stephen, Caro Quintero, Alejandro, Massart, Sebastien, Belaich, Mariano Nicolás

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Epidemiología molecular y genómica comparativa de Leptospira spp. en Argentina by Varni, Vanina Delia

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Genomic characterization of antimicrobialresistance and virulence factors in Salmonella isolates obtained from pig farms in Antioquia, Colombia by García Álvarez, María Isabel, Vidal, Juana L., Donado Godoy, Pilar, Smith, Jared, Shariat, Nikki, Valencia, María Fernanda, Gómez Osorio, Luis M., López Osorio, Sara, Chaparro Gutiérrez, Jenny J.

“…A total of 28 isolates of Salmonella spp. were included, which presented phenotypic resistance to more than one antibiotic used in pig farms. Whole genome sequencing (WGS) was performed in the Unit of Genomic of Agrosavia using an automated pipeline from the GHRU- Sanger Institute, employing the Illumina MiSeq platform. …”
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Genus-targeted markers for the taxonomic identification and monitoring of coagulase-positive and coagulase-negative Staphylococcus species by Jimenez Velasquez, Sabrina Del Carmen, Pacheco Montealegre, M.E, Torres Higuera, Ligia Denise, Uribe Gutierrez, Liz Alejandra, Burbano David, Diana Marcela, Davila Mora, Lizeth Lorena, Renjifo Ibáñez, Maria Camila, Quintero A., Caro

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CRISPR/Cas9-mediated editing of DMR6 orthologue in banana (Musa spp.) confers enhanced resistance to bacterial disease by Tripathi, J., Ntui, V.O., Shah, T., Tripathi, L.

“…Xcm is a genetically homogenous pathogen, though genome sequencing has revealed six closely related clades (Nakato et al., 2021). …”
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Robust and efficient software for reference-free genomic diversity analysis of GBS data on diploid and polyploid species by Parra Salazar, Andrea, Gomez, Jorge, Lozano Arce, Daniela, Reyes Herrera, Paula H., Duitama, Jorge

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Masked genotype 6 of bovine leukemia virus is found in colombian cattle by Corredor Figueroa, Adriana Patricia, Olaya Galán, Nury Nathalia, Salas, Sandra Patricia, Quintero, Juan Sebastián, Fajardo, Álvaro, Soñora, Martín, Moreno, Pilar, Cristina, Juan, Sánchez, Alfredo, Tobón, Julio, Ortiz, Diego, Gutierrez, María Fernanda

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Colección de Microorganismos con Interés en Salud Animal (CMISA) (bacterias y virus - ectoparásitos y hemoparásitos) by Torres Higuera, Ligia Denise, Jiménez Velásquez, Sabrina del Carmen, López Ardila, David Emigdio, Beltrán, Óscar Gabriel, Rengifo Ibáñez, María Camila

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Identifying Genes Associated with Abiotic Stress Tolerance Suitable for CRISPR/Cas9 Editing in Upland Rice Cultivars Adapted to Acid Soils by Barrero, Luz Stella, Willmann, Matthew, Craft, Eric, Manna Akther, Kazi, Harrington, Sandra E., Harrington, Sandra E., Glahn, Raymond, Piñeros, Miguel, Mccouch, Susan

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Potential implications of the use of digital sequence information on genetic resources for the three objectives of the Convention on Biological Diversity. A submission from CGIAR t... by Halewood, Michael, López Noriega, Isabel, Ellis, David, Roa, C., Rouard, M., Sackville-Hamilton, N. Ruaraidh

“…Technological capacities to generate genomic sequence data have accelerated faster than capacities to enable practical use of this information. …”
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Posibles repercusiones del uso de la información digital sobre secuencias de recursos genéticos para los tres objetivos del Convenio sobre la Diversidad Biológica. Informe del CGIA... by Halewood, Michael, López Noriega, Isabel, Ellis, David, Roa, C., Rouard, M., Sackville-Hamilton, N. Ruaraidh

“…Technological capacities to generate genomic sequence data have accelerated faster than capacities to enable practical use of this information. …”
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Implications potentielles de l’utilisation de l’information génétique numérique sur les ressources génétiques sur les trois objectifs de la Convention sur la diversité biologique.... by Halewood, Michael, López Noriega, Isabel, Ellis, David, Roa, C., Rouard, M., Sackville-Hamilton, N. Ruaraidh

“…Technological capacities to generate genomic sequence data have accelerated faster than capacities to enable practical use of this information. …”
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Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods by Martin, G., Baurens, F.C., Droc, Gaëtan, Rouard, M., Cenci, A., Kilian, Andrzej, Hastie, A., Doležel, Jaroslav, Aury, J.M., Alberti, A., Carreel, F., D’Hont, Angélique

“…Recent advances in genomics indicate functional significance of a majority of genome sequences and their long range interactions. As a detailed examination of genome organization and function requires very high quality genome sequence, the objective of this study was to improve reference genome assembly of banana (Musa acuminata).…”
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A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping by Ollitrault, Patrick, Terol, Javier, Chen, Chunxian, Federici, Claire T., Lotfy, Samia, Hippolyte, Isabelle, Ollitrault, Frederique, Berard, Aurelie, Chauveau, Aurelie, Cuenca, José, Costantino, Gilles, Kacar, Yildiz Aka, Mu, Lisa, García-Lor, Andrés, Froelicher, Yann, Aleza, Pablo, Boland, Anne, Billot, Claire, Navarro, Luis, Luro, Francois, Roose, Mikeal L., Gmitter Jr., Frederick G., Talón, Manuel, Brunel, Dominique

“…Conclusions: A reference genetic map of citrus, used to facilitate the chromosome assembly of the first citrus reference genome sequence, was established. The high conservation of marker order observed at the interspecific level should allow reasonable inferences of most citrus genome sequences by mapping next-generation sequencing (NGS) data in the reference genome sequence. …”
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