Resultados de búsqueda - "genome sequencing"

Genomic characterization of multidrug-resistant Salmonella serovars Derby and Rissen from the pig value chain in Vietnam por González Santamarina, B., García-Soto, S., Sinh Dang-Xuan, Abdel-Glil, M.Y., Meemken, D., Fries, R., Tomaso, H.

“…In addition, whole-genome sequencing (WGS) was used to detect ARGs and plasmids conferring multidrug resistance. …”
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Genome-wide investigations reveal the population structure and selection signatures of Nigerian cattle adaptation in the sub-Saharan tropics por Mauki, D.H., Tijjani, Abdulfatai, Cheng Ma, Ng'ang'a, S.I., Mark, A.I., Sanke, O.J., Abdussamad, A.M., Olaogun, S.C., Ibrahim, J., Dawuda, P.M., Mangbon, G.F., Kazwala, R.R., Gwakisa, P.S., Ting‑Ting Yin, Yan Li, Min‑Sheng Peng, Adeola, A.C., Ya‑Ping Zhang

“…In this study, genome-wide analysis based on genotyping-by-sequencing (GBS) of 193 Nigerian cattle was used to reveal new insights on the history of West African cattle and their adaptation to the tropical African environment, particularly in sub-Saharan region.The GBS data were evaluated against whole-genome sequencing (WGS) data and high rate of variant concordance between the two platforms was evident with high correlated genetic distance matrices genotyped by both methods suggestive of the reliability of GBS applicability in population genetics. …”
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Genomic-assisted breeding for abiotic stress tolerance in horticultural crops por Paliwal, R., Singh, G., Mir, R.R., Gueye, B.

“…Similarly, whole-genome sequencing following NGS-based technologies aids in the identification of the genomic-regions governing complex stress tolerance–related traits. …”
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Multi-drug resistant Staphylococcus aureus carriage in abattoir workers in Busia, Kenya por Obanda, B.A., Gibbons, C.L., Fèvre, Eric M., Bebora, L., Gitao, G., Ogara, W., Wang, S.-H., Gebreyes, W., Ngetich, R., Blane, B., Coll, F., Harrison, E.M., Kariuki, S., Peacock, S.J., Cook, Elizabeth A.J.

“…Isolates underwent whole genome sequencing and Multi Locus Sequence Types were derived from these data. …”
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Shared pedigree relationships and transmission of unreduced gametes in cultivated banana por Martin, Guillaume, Baurens, Franc-Christophe, Labadie, Karine, Hervouet, Catherine, Salmon, Frédéric, Marius, Franck, Paulo-de-la-Reberdiere, Nilda, Van Den Houwe, Ines, Aury, Jean-Marc, D’Hont, Angélique, Yahiaoui, Nabila

“…Methods We used SNP genotyping data from whole-genome sequencing of 178 banana individuals, including 111 cultivars, 55 wild bananas and 12 synthetic F1 hybrids. …”
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High-density mapping of durable and broad-spectrum stripe rust resistance gene Yr30 in wheat por Wang, Xiaoting, Xiang, Mingjie, Li, Huaizhou, Li, Xiaoxiao, Mu, Keqing, Huang, Shuo, Zhang, Yibo, Cheng, Xiangrui, Yang, Shuqing, Yuan, Xunying, Singh, Ravi P., Bhavani, Sridhar, Zeng, Qingdong, Wu, Jianhui, Kang, Zhensheng, Liu, Shengjie, Han, Dejun

“…This interval corresponded to a 610-kb region in the International Wheat Genome Sequencing Consortium (IWGSC) RefSeq version 2.1 on chromosome arm 3BS harboring 30 high-confidence genes. …”
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Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics por Zhang, Fan, Hu, Zhiqiang, Wu, Zhichao, Lu, Jialing, Shi, Yingyao, Xu, Jianlong, Wang, Xiyin, Wang, Jinpeng, Wang, Mingming, Shi, Xiaorong, Cui, Yanru, Vera Cruz, Casiana, Zhuo, Dalong, Hu, Dandan, Li, Min, Wang, Wensheng, Zhao, Xiuqin, Zheng, Tianqing, Fu, Binying, Ali, Jauhar, Zhou, Yongli, Li, Zhikang

“…A 1D/2D genome-wide association study strategy was adopted to investigate the genetic systems underlying the reciprocal adaptation of rice (Oryza sativa) and its bacterial pathogen, Xanthomonas oryzae pv. oryzae (Xoo) using the whole-genome sequencing and large-scale phenotyping data of 701 rice accessions and 23 diverse Xoo strains. …”
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Low occurrence and clonal relatedness of multi-drug resistant Escherichia coli carrying transmissible colistin resistance mcr-1 genes in Ugandan poultry por Wainaina, M., Ndoboli, Dickson, Ayebare, Dreck, Mbatidde, Irene, Roesel, Kristina, Hammerl, J.A., Moodley, Arshnee, Tenhagen, B.-A., Binsker, U.

“…All isolates had MIC values ranging from 4 to 8 mg/L, belonged to sequence type 155 and exhibited multidrug resistance to antibiotics commonly used on the farms. Whole genome sequencing based phylogeny indicated a close clonal relationship, with SNP distances ranging from 0 to 4 between the isolates from both districts. …”
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The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number por Collins, N.E., Liebenberg, J., Villiers, Etienne P. de, Brayton, K.A., Louw, E., Pretorius, E., Faber, F.E., Heerden, H. van, Josemans, A., Kleef, M. van, Steyn, H.C., Strijp, M.F. van, Zweygarth, E., Jongejan, F., Maillard, J.C., Berthier, D., Botha, M., Joubert, F., Corton, C.H., Thomson, N.R., Allsopp, M.T., Allsopp, B.A.

“…It is a major constraint to livestock production throughout subSaharan Africa, and it threatens to invade the Americas, yet there is no immediate prospect of an effective vaccine. A shotgun genome sequencing project was undertaken in the expectation that access to the complete protein coding repertoire of the organism will facilitate the search for vaccine candidate genes. …”
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Construction and EST sequencing of full-length, drought stress cDNA libraries for common beans (Phaseolus vulgaris L.) por Blair, Matthew W., Fernández, A.C., Ishitani, Manabu, Moreta Mejia, DE, Seki, M., Ayling, S., Shinozaki, Kazuo

“…The goal of this research was to use full-length cDNA technology to develop ESTs that would overlap with the beginning of open reading frames and therefore be useful for gene annotation of genomic sequences. The library was also constructed to represent genes expressed under drought, low soil phosphorus and high soil aluminum toxicity. …”
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IPM-omics: from genomics to extension for integrated pest management of cowpea por Agunbiade, T.A., Steele, L., Coates, B., Gassmann, A., Margam, V., Ba, Malick N., Dabiré-Binso, C., Baoua, I., Bello-Bravo, Julia, Seufferheld, F., Sun, W., Tamò, Manuele, Pittendrigh, Barry Robert

“…This emerging field, which we refer to as “IPM-omics”, builds upon recent advances in genome sequencing technologies and detection of largescale gene polymorphisms, which are becoming economically feasible for pest insect systems. …”
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Leptospira species molecular epidemiology in the genomic era por Caimi, Karina Cynthia, Repetto, Silvia A., Varni, Vanina Delia, Ruybal, Paula

“…Hundreds of whole genome sequences from worldwide isolates of Leptospira spp. are available nowadays, together with online tools that permit to assign MLST sequence types (STs) directly from raw sequence data. …”
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Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions por Reig-Valiente, Juan L., Viruel, Juan, Sales, Ester, Marqués, Luis, Terol, Javier, Gut, Marta, Derdak, Sophia, Talón, Manuel, Domingo, Concha

“…The collection encompasses modern elite and old cultivars, as well as traditional landraces covering a wide genetic diversity available for rice breeders. Whole Genome Sequencing was performed on 14 cultivars representative of the collection and the genomic profiles of all cultivars were constructed using a panel of 2697 SNPs with wide coverage throughout the rice genome, obtained from the sequencing data. …”
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Ploidy manipulation for citrus breeding, Genetics, and genomics por Ollitrault, Patrick, Germana, Maria Antonietta, Froelicher, Yann, Cuenca, José, Aleza, Pablo, Morillon, Raphael, Grosser, J. D., Guo, Wenwu

“…The research areas reviewed are as follows: haploids and doubled haploids for genome sequencing and haplotyping, centromere mapping from unreduced gametes, marker–trait association study in polyploids, and phenome and gene expression in polyploids with a special focus on polyploidy and adaptation. …”
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Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape por Muloi, Dishon M., Wee, B.A., McClean, D.M.H., Ward, M.J., Pankhurst, L., Phan, H., Ivens, A.C., Kivali, Velma, Kiyong'a, Alice, Ndinda, Christine, Gitahi, N., Ouko, T.T., Hassell, James M., Imboma, Titus, Akoko, James M., Karani, Maurice K., Njoroge, Samuel M., Muinde, Patrick, Nakamura, Y., Alumasa, Lorren, Furmaga, E., Kaitho, T., Öhgren, E.M., Amanya, Fredrick, Ogendo, Allan, Wilson, D.J., Bettridge, Judy M., Kiiru, J., Kyobutungi, C., Tacoli, C., Kang'ethe, Erastus K., Davila, J.D., Kariuki, S., Robinson, Timothy P., Rushton, J., Woolhouse, Mark E.J., Fèvre, Eric M.

“…We performed whole-genome sequencing of 1,338 E. coli isolates and found that the diversity and sharing patterns of E. coli were heavily structured by household and strongly shaped by host type. …”
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Imported SARS-CoV-2 variants of concern drove spread of infections across Kenya during the second year of the pandemic por Nasimiyu, C., Matoke-Muhia, D., Rono, Gilbert K., Osoro, E., Ouso, Daniel O., Mwangi, J.M., Mwikwabe, N., Thiong’o, K., Dawa, J., Ngere, I., Gachohi, J., Kariuki, S., Amukoye, E., Mureithi, M., Ngere, P., Amoth, P., Were, I., Makayotto, L., Nene, Vishvanath M., Okoth, Edward A., Njenga, M.K., Seifert, S.N., Oyola, Samuel O.

“…Whole SARS-CoV-2 genome sequencing were carried out on 1241 specimens. Over the pandemic duration (March 2020–January 2022), Kenya experienced five waves characterized by attack rates (AR) of between 65.4 and 137.6 per 100,000 persons, and intra-wave case fatality ratios (CFR) averaging 3.5%, two-fold higher than the national average COVID-19 associated CFR. …”
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Exploring Chickpea Germplasm Diversity for Broadening the Genetic Base Utilizing Genomic Resourses por Singh, Rajesh, Singh, Charul, A, Ambika, Chandana, B. S., K. Mahto, Rohit, Patial, Ranjana, Gupta, Astha, Gahlaut, Vijay, G, Gayacharan, Hamwieh, Aladdin, Upadhyaya, Hari D., Kumar, Rajendra

“…Next-generation sequencing technologies, whole-genome sequencing, transcriptomics, and differential genes expression profiling along with a plethora of novel techniques like single nucleotide polymorphism exploiting high-density genotyping by sequencing assays, simple sequence repeat markers, diversity array technology platform, and whole-genome re-sequencing technique led to the identification and development of QTLs and high-density trait mapping of the global chickpea germplasm. …”
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Genome-wide diversity and admixture of five indigenous cattle populations from the Tigray region of northern Ethiopia por Zegeye, T., Belay, G., Vallejo Trujillo, Adriana, Han Jianlin, Hanotte, Olivier H.

“…Here, we used whole genome sequencing data to characterise the genomic diversity, relatedness, and admixture of five cattle populations (Abergelle, Arado, Begait, Erob, and Raya) indigenous to the Tigray region of Ethiopia. …”
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Removal of transgenes and Evaluation of yield penalties in genome edited bacterial blight resistant rice varieties por Loo, Eliza P.I., Huguet‐Tapia, José C., Selvaraj, Michael, Stiebner, Melissa, Killing, Britta, Buchholzer, Marcel, Schepler‐Luu, Van, Hartwig, Thomas, Valdéz Gutierrez, Sandra P., Rast‐Somssich, Madlen I., Balahadia, Christian Paolo, Slamet‐Loedin, Inez H., Oliva, Ricardo, Szurek, Boris, Tohme, Joe, Chavarriaga, Paul, White, Frank F., Yang, Bing, Frommer, Wolf B.

“…Various strategies were evaluated, including herbicide tolerance, PCR, DNA gel blotting, whole genome sequencing (WGS), and specific tests stipulated by country‐specific biosafety guidelines. …”
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Genome-wide association study of a Guinea grass (Megathyrsus maximus) diversity panel reveals the genetic basis of agronomic and nutritional traits por Lopez-Contreras, Lina Maria, Denning-James, Kate E., Carvajal Tapia, Juliana, Arango, Jacobo, Villegas, Daniel Mauricio, Jauregui, Rosa Noemi, Wenzl, Peter, De Vega, Jose J., Carvajal Yepes, Monica

“…In this study, we conducted genome-wide association studies (GWAS) using whole genome sequencing (WGS) data from 124 diverse M. maximus genebank accessions, yielding a high-density single-nucleotide polymorphism (SNP) data set of 1,261,156 SNPs after mapping to a related reference genome. …”
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