Resultados de búsqueda - "genome sequencing"

Epidemiology of antimicrobial resistance at the livestock-human interface in an urban environment: a One Health approach por Muloi, Dishon M.

“…E. coli was characterised both phenotypically (through antimicrobial susceptibility testing) and genetically (through whole genome sequencing). In the first part of this thesis, I conduct a comprehensive systematic review to investigate existing evidence that food animals are responsible for transfer of resistant E. coli and their AMR determinants to humans. …”
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Whole genome diversity of indigenous chicken populations in Ethiopia por Kebede, A., Tesfaye, K., Belay. G., Vallejo, A., Dessie, Tadelle, Spark, N., Hanotte, Olivier H., Raman, L.., Gheyas, Almas A.

“…Here, we report the genomic diversity of Ethiopian indigenous chicken through discovery and characterization of 21 million SNPs (72% novel) from 27 indigenous chicken populations (n = 260 birds) using whole genome sequencing. In each population around 10 to12 million SNPs are present, of which, 40 - 47% are heterozygote. …”
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Detection of African swine fever virus genotype XV in a sylvatic cycle in Saadani National Park, Tanzania por Peter, Emma, Machuka, Eunice M., Githae, Dedan, Okoth, Edward A., Cleaveland, S., Shirima, G., Kusiluka, L.J.M., Pelle, Roger

“…Our findings suggest that genotype XV previously reported in 2008 in Tanzania is likely to be widely distributed and involved in both wild and domestic infection cycles. Whole‐genome sequencing and analysis of the ASFV genotype XV circulating in Tanzania is recommended to determine the phylogeny of the viruses.…”
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Integrated environmental and genomic analysis reveals the drivers of local adaptation in African indigenous chickens por Gheyas, Almas A., Vallejo Trujillo, Adriana, Kebede, Adebabay, Lozano Jaramillo, Maria, Dessie, Tadelle, Smith, Jacqueline, Hanotte, Olivier H.

“…Genome analyses based on whole-genome sequencing (n = 245), identified a few strongly supported genomic regions under selection for environmental challenges related to altitude, temperature, water scarcity, and food availability. …”
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Mapping Solanum chacoense mediated Colorado potato beetle (Leptinotarsa decemlineata) resistance in a self-compatible F2 diploid population por Kaiser, N., Manrique, N., DiFonzo, C., Coombs, J., Douches, D.

“…Bulk segregant whole genome sequencing of the same F2 population detected QTL associated with Colorado potato beetle resistance on chromosomes 2, 4, 6, 7, and 12. …”
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Comparative population genomic analysis uncovers novel genomic footprints and genes associated with small body size in Chinese pony por Nanaei, H.A., Esmailizadeh, A., Mehrgardi, A.A., Han Jianlin, Wu, Dong-Dong, Li, Yan, Zhang, Ya-Ping

“…In this study, we employed comparative population genomics to study the genetic basis underlying the small body size of DBP breed based on the whole genome sequencing data. To detect genomic signatures of positive selection, we applied three methods based on population comparison, fixation index (FST), cross population composite likelihood ratio (XP-CLR) and nucleotide diversity (θπ), and further analyzed the results to find genomic regions under selection for body size-related traits.A number of protein-coding genes in windows with the top 1% values of FST (367 genes), XP-CLR (681 genes), and log2 (θπ ratio) (332 genes) were identified. …”
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Intraspecific variation within Castor bean (Ricinus communis L.) based on chloroplast genomes por Muraguri, S., Xu, W., Chapman, M., Muchugi, A., Oluwaniyi, A., Oyebanji, O., Liu, A.

“…Herein, we carried out plastome genome sequencing of 20 wild and cultivated castor bean accessions to examine plastome structural variations (PSVs). …”
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Editorial: Genome wide association studies and genomic selection for crop improvement in the era of Big Data por Bentley, Alison R., Chen, Charles, D’Agostino, Nunzio

“…Whole genome re-sequencing, genome skimming, fractional genome sequencing strategies, and high-density genotyping arrays enable large-scale assessment of genetic diversity for a wide range of species, including major and “orphan” crops (D’Agostino and Tripodi, 2017; Rasheed et al., 2017). …”
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Diversity of Salmonella enterica phages isolated from chicken farms in Kenya por Gunathilake, K.M.D., Makumi, Angela, Loignon, S., Tremblay, D., Labrie, S., Svitek, Nicholas, Moineau, S.

“…Specifically, the phages were isolated from chicken feces as well as from swabs and water samples obtained from chicken farms and slaughterhouses in Nairobi and Kiambu counties. Genome sequencing and analysis revealed that 59 phage isolates were distinct and could be grouped into 17 clusters belonging to four major types of phages (MT1–4). …”
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Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice por Yu, Zhichao, Chen, Yongming, Zhou, Yong, Zhang, Yulu, Li, Mengyuan, Ouyang, Yidan, Chebotarov, Dmytro, Mauleon, Ramil, Zhao, Hu, Xie, Weibo, McNally, Kenneth L., Wing, Rod A., Guo, Weilong, Zhang, Jianwei

“…Since the first gold-standard reference genome of rice variety Nipponbare was published (International Rice Genome Sequencing Project, 2005), an increasing number of rice accessions have been sequenced, assembled, and annotated with global efforts. …”
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Tolerance of iron-deficient and -toxic soil conditions in rice por Mahender, Anumalla, Swamy, B.P. Mallikarjuna, Anandan, Annamalai, Ali, Jauhar

“…Therefore, the integration of breeding with advanced genome sequencing and omics technologies allows for the fine-tuning of tolerant genotypes on the basis of molecular genetics, and the further identification of novel genes and transporters that are related to Fe regulation from FTS and FDS conditions is incredibly important to achieve further success in this aspect.…”
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Allele mining and enhanced genetic recombination for rice breeding por Leung, Hei, Raghavan, Chitra, Zhou, Bo, Oliva, Ricardo, Choi, Il-Ryong, Lacorte, Vanica, Jubay, Mona Liza, Vera Cruz, Casiana, Gregorio, Glenn, Singh, Rakesh Kumar, Ulat, Victor Jun, Borja, Frances Nikki, Mauleon, Ramil, Alexandrov, Nickolai N., McNally, Kenneth L., Hamilton, Ruaraidh Sackville

“…The publication of the first reference genome of Nipponbare by the International Rice Genome Sequencing Project (IRGSP) marked the beginning of a systematic exploration and use of rice diversity for genetic research and breeding. …”
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Wild Lathyrus—A Treasure of Novel Diversity por Singh, Akanksha, Balech, Rind, Barpete, Surendra, Gupta, Priyanka, Bouhlal, Outmane, Tawkaz, Sawsan, Kaul, Smita, Tripathi, Kuldeep, Amri, Ahmed, Maalouf, Fouad, Gupta, Sanjeev, Agrawal, Shiv Kumar

“…Further progress in omics technologies—such as transcriptomics, proteomics, and metabolomics—along with genome sequencing and editing, has greatly accelerated the development of grasspea varieties with reduced or zero ODAP content, while also enhancing the plant’s agronomic value. …”
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HIV-PDI: A protein-drug interaction resource for structural analyses of HIV drug resistance: 1. Concepts and associated database por Ghemtio, L., Smail-Tabbone, M., Djikeng, Appolinaire, Devignes, M., Keminse, L., Kelbert, P., Fokam, J., Maigret, B., Ouwe Missi Oukem-Boyer, O.

“…Overcoming the problem of resistance to antiretroviral drugs (ARVs) in HIV-infected patients is a major issue in AIDS research today. Advances in genome sequencing have facilitated the identification of a growing number of individual genotypes. …”
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A Fosmid pool-based next generation sequencing approach to haplotype-resolve whole genomes por Suk, Eun-Kyung, Schulz, Sabrina, Mentrup, Birgit, Huebsch, Thomas, Duitama, Jorge, Hoehe, Margret R.

“…Moreover, haplotype-resolved genome sequencing allows description and interpretation of the diploid nature of genome biology, for example through the analysis of haploid gene forms and allele-specific phenomena. …”
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Xanthomonas campestris pv. musacearum: a major constraint to banana, plantain and enset production in central and east Africa over the past decade por Nakato, V., Mahuku, George S., Coutinho, Teresa A.

“…Diversity There is a high level of genetic homogeneity within Xcm, although genome sequencing has revealed two major sublineages. …”
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Banana Fusarium wilt (Fusarium oxysporum f. sp. cubense) control and resistance, in the context of developing wilt-resistant bananas within sustainable production systems por Siamak, S.B., Zheng, S.

“…Elucidating the mechanism of infection and molecular basis of host defense through banana genome sequencing, genome editing and proteomic profile analysis will help formulate strategies to develop resistant cultivars. …”
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Genomic characterization of Escherichia coli isolates from alpaca crias (Vicugna pacos) in the peruvian highlands: insights into functional diversity and pathogenicity por Zapata, Celso, Rodriguez Perez, Lila Maciel, Romero Avila, Yolanda Madedein, Coila, Pedro, Hañari Quispe, Renán Dilton, Oros, Oscar, Zanabria, Víctor, Quilcate Pairazaman, Carlos Enrique, Rojas Cruz, Diórman, Cruz Luis, Juancarlos Alejandro, Ortiz Morera, Narda Cecilia, Estrada Cañari, Richard

“…This study analyzed 10 E. coli isolates from diarrheic and healthy alpacas using whole-genome sequencing to assess genetic diversity, virulence factors, and antibiotic resistance. …”
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Presence of recombinant Potato virus Y genotypes in Sweden por Youssef, Asmaa

“…These findings indicate the absence of PVYO and PVYD strains from the tested samples and that the PVYO patterns obtained in the multiplex-PCR were generated by other related genotypes. Full-genome sequencing is required to be carried out to identify in more detail the exact PVY genotypes in selected samples. …”

Shiga toxin-producing Escherichia coli (STEC) isolated from fecal samples of African dromedary camels por Baschera, M., Cernela, N., Stevens, M.J.A., Liljander, Anne M., Jores, Joerg, Max Corman, V., Nüesch-Inderbinen, M., Stephan, R.

“…In addition, whole genome sequencing (WGS) was carried out to detect further virulence genes and to determine the multilocus sequence types (MLST). …”
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