Search Results - "genome evolution"

Oryza genome evolution through a tetraploid lens by Fornasiero, Alice, Feng, Tao, Al-Bader, Noor, Alsantely, Aseel, Mussurova, Saule, Hoang, Nam V., Misra, Gopal, Zhou, Yong, Fabbian, Leonardo, Mohammed, Nahed, Rivera Serna, Luis, Thimma, Manjula, Llaca, Victor, Parakkal, Praveena, Kudrna, David, Copetti, Dario, Rajasekar, Shanmugam, Lee, Seunghee, Talag, Jayson, Sobel-Sorenson, Chandler, Carpentier, Marie-Christine, Panaud, Olivier, McNally, Kenneth L., Zhang, Jianwei, Zuccolo, Andrea, Schranz, M. Eric, Wing, Rod A.

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Machine learning reveals spatiotemporal genome evolution in Asian rice domestication by Ohyanagi, Hajime, Goto, Kosuke, Negrão, Sónia, Wing, Rod A., Tester, Mark A., McNally, Kenneth L., Bajic, Vladimir B., Mineta, Katsuhiko, Gojobori, Takashi

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New insights into Oryza genome evolution: high gene colinearity and differential retrotransposon amplification by Zhang, Shibo, Gu, Yong Qiang, Singh, Jaswinder, Coleman-Derr, Devin, Brar, Darshan S., Jiang, Ning, Lemaux, Peggy G.

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Genomic evolution of bovine viral diarrhea virus based on complete genome and individual gene analyses by Spetter, Lucas Maximiliano, Louge Uriarte, Enrique Leopoldo, Verna, Andrea Elizabeth, Odeon, Anselmo Carlos, González Altamiranda, Erika

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The genome and GeneBank genomics of allotetraploid Nicotiana tabacum provide insights into genome evolution and complex trait regulation by Zan, Yanjun, Chen, Shuai, Ren, Min, Liu, Guoxiang, Liu, Yutong, Han, Yu, Dong, Yang, Zhang, Yao, Si, Huan, Liu, Zhengwen, Liu, Dan, Zhang, Xingwei, Tong, Ying, Li, Yuan, Jiang, Caihong, Wen, Liuying, Xiao, Zhiliang, Sun, Yangyang, Geng, Ruimei, Ji, Yan, Feng, Quanfu, Wang, Yuanying, Ye, Guoyou, Fang, Lingzhao, Chen, Yong, Cheng, Lirui, Yang, Aiguo

“…Chromosome rearrangements and epigenetic modifications are associated with genome evolution and expression coordination following polyploidization. …”
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A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution by Iorizzo, Massimo, Ellison, Shelby L., Senalik, Douglas A., Peng, Zeng, Satapoomin, Pimchanok, Jiaying, Huang, Bowman, Megan, Iovene, Marina, Sanseverino, Walter, Cavagnaro, Pablo, Yildiz, Mehtap, Macko-Podgórni, Alicja, Moranska, Emilia, Grzebelus, Ewa, Grzebelus, Dariusz, Ashrafi, Hamid, Zhijun, Zheng, Shifeng, Cheng, Spooner, David M., Deynze, Allen Van, Simon, Philipp W.

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The Oryza BAC resource: a genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives by Ammiraju, Jetty S.S., Song, Xiang, Luo, Meizhong, Sisneros, Nicholas, Angelova, Angelina, Kudrna, David, Kim, HyeRan, Yu, Yeisoo, Goicoechea, Jose Luis, Lorieux, Mathias, Kurata, Nori, Brar, Darshan, Ware, Doreen, Jackson, Scott, Wing, Rod A.

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Gene expression polymorphism underpins evasion of host immunity in an asexual lineage of the Irish potato famine pathogen by Pais, M., Yoshida, K., Giannakopoulou, A., Pel, M.A., Cano, L., Oliva, R.F., Witek, K., Lindqvist-Kreuze, H., Vleeshouwers, V., Kamoun, S.

“…However, the dynamics of genome evolution within these clonal lineages have not been determined. …”
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Banana Genome Hub: empowering global collaboration in research by Rouard, Mathieu

“…As an important information system in the landscape of plant genomic research, it has supported numerous organizations worldwide to conduct studies on banana genome evolution and diversity. This understanding is key to conserving genetic resources and ensuring the sustainability of banana crops worldwide.…”
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A genomic view of the banana (Musa spp.) diversification: the case of triploid ABB genome group by Cenci, A., Sardos, J., Hueber, Y., Zorrilla-Fontanesi, J., Wesemael, Jelle van, Swennen, Rony L., Roux, N., Carpentier, Sebastien C., Rouard, M.

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Randomly primed PCR amplification of pooled DNA reveals polymorphism in a ruminant repetitive DNA sequence which differentiates Bos indicus and Bos taurus by Kemp, Stephen J., Teale, A.J.

“…The general approach used to identify population‐specific DNA polymorphisms has potentially broad application in definition of species, breeds and populations and will be of generic value in studies of genome evolution.…”
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Molecular markers and genome mapping in cowpea by Fatokun, C.A., Young, N., Myers, G.

“…Molecular markers such as RFLPs exist in almost limitless number in all organisms, and these could be very useful in monitoring the loci of genes that control important traits, as well as in studying genome evolution and structure. In cowpea, a genome map based mainly on RFLP markers has been developed. …”
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Glycosyltransferase Family 61 in Liliopsida (Monocot): The story of a gene family expansion by Cenci, A., Chantret, Nathalie, Rouard, M.

“…These copy number expansions result from both tandem and segmental duplications during the genome evolution of monocot lineages. We suggest that the gene number expansion of GT61 was accompanied by functional diversification and propose a classification of the angiosperm GT61 genes based on orthogroups defined at different taxonomic levels.…”
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A genomic approach to the evolution, diversification and domestication of the genus Citrus by Borredá, Carles

“…Understanding the processes that shaped the evolution and subsequent domestication of the genus will prove useful for citrus breeders while providing novel insights in the field of plant genome evolution.…”
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Chromosome painting facilitates anchoring reference genome sequence to chromosomes In Situ and integrated karyotyping in banana (Musa Spp.) by Šimoníková, D., Němečková, A., Karafiátová, M., Uwimana, Brigitte, Swennen, Rony L., Doležel, Jaroslav, Hřibová, E.

“…This advance will enable comparative FISH mapping and identification of chromosomal translocations which accompanied genome evolution and speciation in the family Musaceae.…”
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Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti by Copetti, Dario, Búrquez, Alberto, Bustamante, Enriquena, Charboneau, Joseph L. M., Childs, Kevin L., Eguiarte, Luis E., Lee, Seunghee, Liu, Tiffany L., McMahon, Michelle M., Whiteman, Noah K., Wing, Rod A., Wojciechowski, Martin F., Sanderson, Michael J.

“…We sequenced the genomes of five cacti, including the iconic saguaro of the Sonoran Desert and three other columnar cacti, to investigate whether previously uncharacterized features of genome evolution might explain long-standing challenges to understanding cactus phylogeny. …”
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Characterization of genome-wide segmental duplications reveals a common genomic feature of association with immunity among domestic animals by Xiaotian Feng, Jicai Jiang, Padhi, Abinash, Chao Ning, Jinluan Fu, Aiguo Wang, Mrode, Raphael A., Jian-Feng Liu

“…These common genes mainly consisted of both UDP glucuronosyltransferase and Interferon alpha families, implying the connection between SDs and the evolution of these gene families.Our findings provide insights into livestock genome evolution and offer rich genomic sources for livestock genomic research.…”
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GreenPhylDB: A gene family database for plant functional genomics by Conte, M.G., Laporte, Marie-Angélique, Perin, C., Rouard, M.

“…Clusters are finally processed by phylogenetic analysis to infer orthologs and paralogs that will be particularly helpful to study genome evolution. Previously, each cluster has to be curated (i.e. properly named and classified) using different sources of information. …”
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Recombinations and large structural variations shape the mosaic genomes of interspecific edible bananas by Baurens, F.C., Martin, G., Hervouet, C., Salmon, F., Yohoume D., Ricci, S., Rouard, M., Habas, R., Yahiaoui, N., D’Hont, Angélique

“…The unprecedented resolution in deciphering their genome structure allowed us to start revisiting the origins of banana cultivars and provided new information to gain insight into the impact of interspecificity on genome evolution. It will also facilitate much more effective assessment of breeding strategies.…”
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Morphological characterization in the genus Passiflora L.: an approach to understanding its complex variability by Ocampo Pérez, John A., D'Eeckenbrugge, Geo Coppens

“…Thus, the morphological study allows separating the effects of genome evolution from those of more recent and independent coevolutions concerning the pollination syndromes of supersections Tacsonia and Distephana. …”
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