Resultados de búsqueda - "bioinformatics"

Soil Properties and Bacterial Communities Associated with the Rhizosphere of the Common Bean after Using Brachiaria brizantha as a Service Crop: A 10-Year Field Experiment por Aban, Carla Luciana, Larama, Giovanni, Ducci, María Antonella, Huidobro, Dina Jorgelina, Abanto, Michel, Vargas Gil, Silvina, Perez Brandan, Carolina

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The heart microbiome of insectivorous bats from Central and South Eastern Europe por Corduneanu, Alexandra, Mihalca, Andrei Daniel, Sandor, Attila D., Hornok, Sándor, Malmberg, Maja, Pin Viso, Natalia Daniela, Bongcam-Rudloff, Erik

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Mobilizing Science to Break Yield Barriers por Phillips, Ronald L.

“…Utilizing genetic diversity has been a mainstay of past production improvements High throughput DNA sequencing, the related bioinformatics, and a cascade of genetic technologies can now be employed to detect previously hidden genetic variability, to understand gene functions, to make greater use of accessions in germplasm banks, and to make breeding schemes more efficacious. …”
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Restructuring and revamping of Agriculture Institute por Rana, Abdul Wajid, Haider, Zeeshan

“…Dynamic international markets and the diffusion of bioinformatics technology are shifting farming towards a new organizational model. …”
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Algorithms offering kinetic analysis of drug induced proteasome inhibition and cell clump formation from time lapsed microscopy por Kashif, Mohammad

“…By means of novel bioinformatics algorithms, huge amount of phenotypic data might become available by these techniques which can be used to understand effects of chemical compounds on the cells and profile phenotypically both cell line and chemical compounds. …”

Development of an integrated laboratory information management system of the maize mapping project por Sánchez Villeda, H., Schroeder, S., McMullen, M., Havermann, S., Davis, G., Vroh Bi, Irie, Cone, K., Duru, N., Yim, Y.S., Gardiner, J., Polacco, M., Fang, Z., Coe, E., Sharopova, N., Musket, T., Houchins, K., Schultz, L.

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NASP: A parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments por Semegni, J.Y., Wamalwa, M., Gaujoux, R., Harkins, G.W., Gray, A.R., Martin, D.

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Constructing linkage maps in the genomics era with MapDisto 2.0 por Heffelfinger, Christopher, Fragoso, Christopher A., Lorieux, Mathias

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Revealing sequence variation patterns in rice with machine learning methods por Bohnert, Regina, Zeller, Georg, Clark, Richard M., Childs, Kevin L., Ulat, Victor, Stokowski, Renee, Ballinger, Dennis, Frazer, Kelly, Cox, David, Bruskiewich, Richard, Buell, C. Robin, Leach, Jan, Leung, Hei, McNally, Kenneth L., Weigel, Detlef, Rätsch, Gunnar

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Linking genotype to phenotype: the International Rice Information System (IRIS) por Bruskiewich, Richard M., Cosico, Alexander B., Eusebio, William, Portugal, Arllet M., Ramos, Luralyn M., Reyes, Ma. Teresa, Sallan, May Ann B., Ulat, Victor Jun M., Wang, Xusheng, McNally, Kenneth L., Hamilton, Ruaraidh Sackville, McLaren, Christopher Graham

“…Users can access information in the database through stand-alone programs and WWW interfaces offering specialist views to researchers with different interests.Availability: http://bioinformatics.org/project/?group_id=141Contact: r.bruskiewich@cgiar.orgKeywords: database, crop, rice, germplasm, genotype, phenotype, genomics*To whom correspondence should be addressed.…”
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Enhancing nutrition: a review of provitamin A carotenoid cassava breeding initiatives in East Africa por Abincha, W., Dzidzienyo, D.K., Wesonga, L.N., Mwimali, M., Ozimati, A., Kayondo, S.I., Ofori, K., Tongoona, P., Kivuva, B.M.

“…However, several challenges have emerged, including a negative correlation between carotenoid content and dry matter content in cassava roots, diseases, the absence of affordable high-throughput phenotyping methods, poor cassava flowering, poor pollen viability, low capacity in bioinformatics analyses, degradation of carotenoids during processing, and inadequate germplasm conservation facilities. …”
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VirusDetect: an automated pipeline for efficient virus discovery using deep sequencing of small RNAs por Yi Zheng, Shan Gao, Padmanabhan, C., Li, R., Galvez, M., Gutiérrez, D., Fuentes, S., Kai-Shu Ling, Kreuze, Jan F., Zhangjun Fei

“…Here we present VirusDetect, a bioinformatics pipeline that can efficiently analyze largescale small RNA (sRNA) datasets for both known and novel virus identification. …”
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Functional Analysis of PTPN3 associated with Immune-Mediated Rheumatic Disease in Nova Scotia Duck Tolling Retrievers por Sousa, Pedro

“…Specific aims: 1. Bioinformatics analysis of 3’UTR and the associated region located in intron 18 of PTPN3 gene and DNA sequencing analysis of regions of interest. 2. …”
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Comparative transcriptomic analysis reveals key components controlling spathe color in Anthurium andraeanum (Hort.) por Osorio Guarín, Jaime A., Gopaulchan, David, Quackenbush, Corey, Lennon, Adrian M., Umaharan, Pathmanathan, Cornejo, Omar E.

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Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genome por Bayer, Philipp E., Petereit, Jakob, Durant, Éloi, Monat, Cécile, Rouard, Mathieu, Hu, Haifei, Chapman, Brett, Li, Chengdao, Cheng, Shifeng, Batley, Jacqueline, Edwards, David

“…However, information on the presence or absence of genomic regions has been hard to visualize and interrogate because of the size of these genomes and the lack of suitable bioinformatics tools. To address this limitation, we have produced a wheat pangenome graph maintained within an online database to facilitate interrogation and comparison of wheat cultivar genomes. …”
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The genetics of glioma : and the use of dogs as model for human glioma por Börjesson, Vanja

“…The complexity of the disease requests advanced gene technologies and bioinformatics tools which can aid in the development of new and better diagnosis criteria and therapies. …”

Genome-enabled insights into the biology of thrips as crop pests por Rotenberg, Dorith, Baumann, Aaron A., Ben-Mahmoud, Sulley, Christiaens, Olivier, Dermauw, Wannes, Ioannidis, Panagiotis, Jacobs, Chris G. C., Vargas Jentzsch, Iris M., Oliver, Jonathan E., Poelchau, Monica F., Priya Rajarapu, Swapna, Schneweis, Derek J., Snoeck, Simon, Taning, Clauvis N. T., Wei, Dong, Widana Gamage, Shirani M. K., Hughes, Daniel S. T., Murali, Shwetha C., Bailey, Samuel T., Bejerman, Nicolas Esteban, Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf Georg, Chao, Hsu, Dinh, Huyen, Vardhan Doddapaneni, Harsha, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Qu, Jiaxin, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Park, Yoonseong, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Van der Zee, Maurijn, Van Leeuwen, Thomas, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., Richards, Stephen

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Identification of a fall armyworm (Spodoptera frugiperda)-specific gene and development of a rapid and sensitive loop-mediated isothermal amplification assay por Osabutey, A.F., Seo, B.Y., Kim, A.Y., Ha, T.A.T., Jung, J., Goergen, Georg E., Owusu, E.O., Lee, G.S., Koh, Y.H.

“…In this study, the FAW-specific gene Sf00067 was discovered by performing bioinformatics to develop a fast and accurate tool for the species-specific diagnosis of this pest. …”
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GA-GBLUP: leveraging the genetic algorithm to improve the predictability of genomic selection por Yang Xu, Yuxiang Zhang, Yanru Cui, Kai Zhou, Guangning Yu, Wenyan Yang, Xin Wang, Furong Li, Xiusheng Guan, Xuecai Zhang, Zefeng Yang, Shizhong Xu, Chenwu Xu

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Building the capacity of Africa for biosciences in agriculture por Shah, Tushaar, Terry, Eugene R.

“…The facilities at BecA’s hub offers state-of-the-art research laboratories for the biosciences, including genomics, proteomics, gene technology, immunology, bioinformatics and containment facilities for safe genetic manipulation of plants and micro-organisms (e.g. for vaccine development). …”
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