Resultados de búsqueda - "bioinformatics"

K-mer counting and curated libraries drive efficient annotation of repeats in plant genomes por Contreras-Moreira, Bruno, Filippi, Carla Valeria, Naamati, Guy, García Girón, Carlos, Allen, James E., Flicek, Paul

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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research por Conesa, Ana, Gotz, Stefan, García-Gómez, Juan M., Terol, Javier, Talón, Manuel, Robles, Montserrat

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Virus detection by high-throughput sequencing of small RNAs: large-scale performance testing of sequence analysis strategies por Massart, S., Chiumenti, M., Jonghe, K., Glover, R., Haegeman, A., Koloniuk, I., Kominek, P., Kreuze, Jan F., Kutnjak, D., Lotos, L., Maclot, F., Maliogka, V., Maree, Hans J.

“…Recent developments in high-throughput sequencing (HTS), also called next-generation sequencing (NGS), technologies and bioinformatics have drastically changed research on viral pathogens and spurred growing interest in the field of virus diagnostics. …”
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Virus Detection by High-Throughput Sequencing of Small RNAs: Large-Scale Performance Testing of Sequence Analysis Strategies por Massart, Sebastien, Chiumenti, Michela, De-Jonghe, Kris, Glover, Rachel, Haegeman, Annelies, Koloniuk, Igor, Kominek, Petr, Kreuze, Jan, Kutnjak, Denis, Lotos, Leonidas, Maclot, Francois, Maliogka, Varvara, Maree, Hans J., Olivier, Thibaut, Olmos, Antonio, Pooggin, Mikhail M., Reynard, Jean-Sebastien, Ruiz-García, Ana B., Safarova, Dana, Schneeberger, Pierre H., Sela, Noa, Turco, Silvia, Vainio, Eeva J., Varallyay, Eva, Verdin, Eric, Westenberg, Marcel, Brostaux, Yves, Candresse, Thierry

“…Recent developments in high-throughput sequencing (HTS), also called next-generation sequencing (NGS), technologies and bioinformatics have drastically changed research on viral pathogens and spurred growing interest in the field of virus diagnostics. …”
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Introduction to plant cryopreservation por Panis, Bart

“…The agenda addresses survey findings (e.g., crop priorities, 37.9% lack DNA extraction capacity, 69.0% bioinformatics skills gap) and ensures accessibility for participants from Europe, Africa, Latin America, and beyond. …”
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Practical considerations and challenges of a cryobank por Panis, Bart, Vollmer, Rainer

“…The agenda addresses survey findings (e.g., crop priorities, 37.9% lack DNA extraction capacity, 69.0% bioinformatics skills gap) and ensures accessibility for participants from Europe, Africa, Latin America, and beyond. …”
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Response to Hertz-Fowler and Berriman: Continuing tsetse and trypanosoma genome sequencing projects por Davila, A.M.R., Majiwa, Phelix A.O., Grisard, E.C., Aksoy, S., Hide, W.

“…It is stated that both bioinformatics and research are becoming more necessary and essential in DECs. …”
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maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments por Conesa, Ana, Nueda, María J., Ferrer, Alberto, Talón, Manuel

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Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.) por Moschen, Sebastian Nicolas, Di Rienzo, Julio A., Higgins, Janet, Tohge, Takayuki, Watanabe, Mutsumi, Gonzalez, Sergio Alberto, Rivarola, Maximo Lisandro, García-García, Francisco, Dopazo, Joaquín, Hopp, Horacio Esteban, Hoefgen, Rainer, Fernie, Alisdair R., Paniego, Norma Beatriz, Fernandez, Paula Del Carmen, Heinz, Ruth Amelia

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A N7-guanine RNA cap methyltransferase signature-sequence as a genetic marker of large genome, non-mammalian Tobaniviridae por Ferron, François, Debat, Humberto Julio, Shannon, Ashleigh, Decroly, Etienne, Canard, Bruno

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Next generation diagnostics: from continental viromes to field level molecular diagnostics por Kreuze, Jan F.

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Q&A: The status of ICTs in integrated pest management por Technical Centre for Agricultural and Rural Cooperation

“…Yunlong Xia, Head of the Information Technology and Bioinformatics Department at the International Centre of Insect Physiology and Ecology (ICIPE) in Kenya, provided an overview of the status of and trends in the use of I…”
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BioMoby extensions to the Taverna workflow management and enactment software por Kawas, Edward, Senger, Martin, Wilkinson, Mark D.

“…In parallel with the development of BioMoby, the European myGrid project was designing Taverna, a bioinformatics workflow design and enactment tool. Here we describe the marriage of these two projects in the form of a Taverna plug-in that provides access to many of BioMoby's features through the Taverna interface.The exposed BioMoby functionality aids in the design of "sensible" BioMoby workflows, aids in pipelining BioMoby and non-BioMoby-based resources, and ensures that end-users need only a minimal understanding of both BioMoby, and the Taverna interface itself. …”
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Identification of Cassava MicroRNAs under abiotic stress por Ballén-Taborda, Carolina, Plata, Germán, Ayling, Sarah, Rodríguez Zapata, Fausto, Becerra López Lavelle, Luis Augusto, Duitama, Jorge, Tohme, Joseph M.

“…Here, we use high-throughput sequencing and different bioinformatics methods to identify potential cassava miRNAs expressed in different tissues subject to heat and drought conditions. …”
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Managing high-density genotyping data with Gigwa por Sempéré, Guilhem, Larmande, Pierre, Rouard, Mathieu

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Identification, detection and phylogenetic analysis of new viruses infecting cassava in Colombia por Carvajal, M., Olaya, C., Lozano, I., Castaño, M., Cuervo Ibáñez, Maritza, Cuéllar, Wilmer Jose

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Genome Puzzle Master (GPM)-An integrated pipeline for building and editing pseudomolecules from fragmented sequences por Zhang, Jianwei, Kudrna, Dave, Mu, Ting, Li, Weiming, Copetti, Dario, Yu, Yeisoo, Goicoechea, Jose Luis, Lei, Yang, Wing, Rod A.

“…Availability and Implementation: The GPM (with LIMS) package is available at https://github.com/Jianwei-Zhang/LIMS Contacts: jzhang@mail.hzau.edu.cn or rwing@mail.arizona.edu Supplementary information: Supplementary data are available at Bioinformatics online.…”
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Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection por Duitama, Jorge, Silva, Alexander, Sanabria, Yamid, Cruz, Daniel Felipe, Quintero, Constanza, Ballen, Carolina, Lorieux, Mathias, Scheffler, Brian E., Farmer, Andrew D., Torres Castro, Edgar Alonso, Oard, James, Tohme, Joseph M.

“…In this work we present sequencing and bioinformatics analyses of 104 rice varieties belonging to the major subspecies of Oryza sativa. …”
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Data from: Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection por Duitama, Jorge, Silva, Alexander, Sanabria, Yamid, Cruz, Daniel Felipe, Quintero, Constanza, Ballen, Carolina, Lorieux, Mathias, Scheffler, Brian E., Farmer, Andrew D., Torres Castro, Edgar Alonso, Oard, James, Tohme, Joseph M.

“…In this work we present sequencing and bioinformatics analyses of 104 rice varieties belonging to the major subspecies of Oryza sativa. …”
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Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower por Moschen, Sebastian, Gonzalez, Sergio Alberto, Rivarola, Maximo Lisandro, Hopp, Horacio Esteban, Paniego, Norma Beatriz, Fernandez, Paula del Carmen, Heinz, Ruth Amelia, Bengoa Luoni, Sofia Ailin, Di Rienzo, Julio A., Caro, María del Pilar, Tohge, Takayuki, Watanabe, Mutsumi, Hollmann, Julien, García-García, Francisco, Dopazo, Joaquín, Hoefgen, Rainer, Fernie, Alisdair R.

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